Commits for vsmalladi

v262_preview to v262_preview2 (2012-01-10 to 2012-01-17) v262

• Added 1 more submission. Redmine #5986.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 263, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra - lines changed 27, context: html, text, full: html, text
• Shortened tag for WholeBrain from WHOLEBRAIN -> WBRAIN to accomadate longer file names. Renamed objects accordingly and following release policy, kept old objects with Wholebrain that were released in the UwDnase track.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 1414, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.new.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.new.ra - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 49, context: html, text, full: html, text
• Added 2 more submissions. Redmine #5393.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 261, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra - lines changed 18, context: html, text, full: html, text
• Added md5sum's for new submissions. Redmine #5393.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 11, context: html, text, full: html, text
• Added perioed to end of view descriptions. Redmine #4577, Note #42
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html - lines changed 5, context: html, text, full: html, text
• Replaced expId=623 with a better experiment using a different control. Redmine #4486.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 34, context: html, text, full: html, text
• Added index file into fileName field.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHist.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhRnaSeq.ra - lines changed 4, context: html, text, full: html, text
• Added md5sum's for files and bai files in fileName var. Also replaced 2 duplicate bam's with updated files. Redmine #4486, #4931.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 59, context: html, text, full: html, text
• Added objStatus for the replaced files. Redmine #5394.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 3, context: html, text, full: html, text
• Added GEO Series number to track. Redmine #4577.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwRepliSeq.ra - lines changed 2, context: html, text, full: html, text
• Added composite level meta-data.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 6, context: html, text, full: html, text
• Recovered missing parts of the cv that were accidently deleted in commit 80cb7d51f7359d767e174c991f56c2cdd4ccd1a7.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 665, context: html, text, full: html, text
• Fixes isssues found in Redmine #4577 1. Updated label of dataType from "Repli-Seq" -> "Repli-seq" 2. Standardized apperance of "Wavelet-smoothed Signal" in track description 3. Added clarification of "six fraction profile" as refereing to "six cell cycle fractions" 4. Update long labels to be "Repli-seq" instead of "Replication Timing"
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra - lines changed 161, context: html, text, full: html, text
• Revert "Fixes isssues found in Redmine #4577" This reverts commit 2adb93cfa1136c629a53c8cae9e56c6254c14703.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra - lines changed 161, context: html, text, full: html, text
• Fixes isssues found in Redmine #4577 1. Updated label of dataType from "Repli-Seq" -> "Repli-seq" 2. Standardized apperance of "Wavelet-smoothed Signal" in track description 3. Added clarification of "six fraction profile" as refereing to "six cell cycle fractions"
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra - lines changed 129, context: html, text, full: html, text
• Updated label of dataType from 'Repli-Seq' -> 'Repli-seq', missed in commit 0520f9972ef107cedffcb0653f9f110b8dc9020d. Redmine #4577
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra - lines changed 1, context: html, text, full: html, text
• Updated track to short and long labels as well as has experiment specific viewLimits for Signals. Redmine #110.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 115, context: html, text, full: html, text
• Fixed an error with an experiement where the dateResubmitted replaced dateSubmitted and dateUnrestricted.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 17, context: html, text, full: html, text
• Updated track short and long labels as well as has experiment specific viewLimits for Signals. Redmine #111
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 146, context: html, text, full: html, text