File Changes for braney

v263_preview2 to v263_base (2011-02-07 to 2012-02-14) v263

• src/hg/lib/hVarSubst.c
  • lines changed 8, context: html, text, full: html, text
    take out linkToGatewayPage variable. It's not necessary as using $db works
• src/hg/makeDb/trackDb/README
  • lines changed 2, context: html, text, full: html, text
    add linkToGatewayPage
  • lines changed 2, context: html, text, full: html, text
    take out linkToGateway. Can be built with just $db
• src/hg/makeDb/trackDb/anopheles/anoGam1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/apis/apiMel1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/apis/apiMel2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/armadillo/dasNov1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/baboon/papHam1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cat/felCat3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cat/felCat4/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/chicken/galGal2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/chicken/galGal3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/chimp/panTro1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/chimp/panTro2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/chimp/panTro3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cow/bosTau2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cow/bosTau3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cow/bosTau4/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cow/bosTau6/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/cow/bosTau7/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/dog/canFam1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/dog/canFam2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/dm1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/dm2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/dm3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/dp2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/dp3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droAna1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droAna2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droEre1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droGri1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droMoj1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droMoj2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droPer1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droSec1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droSim1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droVir1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droVir2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droYak1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/drosophila/droYak2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/elephant/loxAfr1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/elephant/loxAfr3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/fugu/fr1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/fugu/fr2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/fugu/fr3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/gibbon/nomLeu1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/gorilla/gorGor3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/guineaPig/cavPor3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/horse/equCab1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/horse/equCab2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/human/hg16/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/human/hg17/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/human/hg18/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/human/hg19/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/lamprey/petMar1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/lancelet/braFlo1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/lizard/anoCar1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/lizard/anoCar2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/marmoset/calJac1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/marmoset/calJac3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/medaka/oryLat1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/medaka/oryLat2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/microbat/myoLuc2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/moleRat/hetGla1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/mouse/mm7/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/mouse/mm8/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/mouse/mm9/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/opossum/monDom1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/opossum/monDom4/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/opossum/monDom5/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/orangutan/ponAbe2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/other/nemVec1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/panda/ailMel1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/pig/susScr2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/platypus/ornAna1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/rabbit/oryCun1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/rabbit/oryCun2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/rat/rn3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/rat/rn4/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/refGene.new.html
  • lines changed 69, context: html, text, full: html, text
    add new genbank trackDb.ra for doc changes for #6237
• src/hg/makeDb/trackDb/rhesus/rheMac2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/rhesus/rheMac3/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/sacCer/sacCer1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/sacCer/sacCer2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/sacCer/sacCer3/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/seaHare/aplCal1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/sheep/oviAri1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/squirt/ci1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/squirt/ci2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/stickleback/gasAcu1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/tetraodon/tetNig1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/tetraodon/tetNig2/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/trackDb.genbank.new.ra
  • lines changed 220, context: html, text, full: html, text
    add new genbank trackDb.ra for doc changes for #6237
• src/hg/makeDb/trackDb/trackDb.genbank.ra
  • lines changed 219, context: html, text, full: html, text
    extract genbank tracks to there own ra file (so release tagging is easier) #6237
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 218, context: html, text, full: html, text
    extract genbank tracks to there own ra file (so release tagging is easier) #6237
  • lines changed 2, context: html, text, full: html, text
    add new genbank trackDb.ra for doc changes for #6237
• src/hg/makeDb/trackDb/turkey/melGal1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/urchin/strPur1/description.html
  • lines changed 3, context: html, text, full: html, text
    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/urchin/strPur2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/wallaby/macEug1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/wallaby/macEug2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/worm/caeJap1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/worm/caePb1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/worm/caePb2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/worm/caeRem2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/worm/caeRem3/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/worm/cb1/description.html
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• src/hg/makeDb/trackDb/worm/cb3/description.html
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• src/hg/makeDb/trackDb/worm/ce10/description.html
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• src/hg/makeDb/trackDb/worm/ce2/description.html
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• src/hg/makeDb/trackDb/worm/ce4/description.html
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• src/hg/makeDb/trackDb/worm/ce6/description.html
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• src/hg/makeDb/trackDb/worm/priPac1/description.html
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• src/hg/makeDb/trackDb/xenTro/xenTro1/description.html
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• src/hg/makeDb/trackDb/xenTro/xenTro2/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/xenTro/xenTro3/description.html
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• src/hg/makeDb/trackDb/zebraFinch/taeGut1/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/zebrafish/danRer3/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/zebrafish/danRer4/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/zebrafish/danRer5/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/zebrafish/danRer6/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237
• src/hg/makeDb/trackDb/zebrafish/danRer7/description.html
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    added a note about the Genbank assembly quality at the bottom. #6237