File Changes for fang
switch to commits view, user indexv263_preview2 to v263_base (2011-02-07 to 2012-02-14) v263
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra
- lines changed 223, context: html, text, full: html, text
add expId, dccAccession to entries with ages other than adult-8wks
- lines changed 162, context: html, text, full: html, text
try to fix failed merge
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
- lines changed 2, context: html, text, full: html, text
renaming wgEncodeLicrRnaSeq.new.ra to wgEncodeLicrRnaSeq.release2.ra, update trackDb.wgEncode.ra for this change
- lines changed 2, context: html, text, full: html, text
change wrangler from Venkat to Fang, renaming wgEncodeLicrHistone.new.ra to wgEncodeLicrHistone.release2.ra, update trackDb.wgEncode.ra for this change
- lines changed 2, context: html, text, full: html, text
change wrangler from Venkat to Fang, renaming wgEncodeLicrTfbs.new.ra to wgEncodeLicrTfbs.release2.ra, update trackDb.wgEncode.ra for this change
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.html
- lines changed 146, context: html, text, full: html, text
add Caltech desription page which is downloaded from redmine (Caltech_mouse_RNA-Seq_Track_Description_2011-09-01.html)
- lines changed 1, context: html, text, full: html, text
changed 'the precise' to 'their precise' in 'In general, these are associated with gene activity, but the precise relationships remain to be established.' which is a bit vague
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.new.ra
- lines changed 56, context: html, text, full: html, text
set vertical viewing range of H3K27ac to 0-5
- lines changed 55, context: html, text, full: html, text
had merge conflict in wgEncodeLicrHistone.new.ra, this is probably caused by last roll back where the viewLimits 0:5 of H3K27ac was added, now this is removed. Strangely this merge conflict message did not show up yesterday when roll back happened. Nothing has been done to this file today
- lines changed 65, context: html, text, full: html, text
re-add viewLimit 0:5 for H3K27ac after rollback
- lines changed 930, context: html, text, full: html, text
change wrangler from Venkat to Fang, renaming wgEncodeLicrHistone.new.ra to wgEncodeLicrHistone.release2.ra, update trackDb.wgEncode.ra for this change
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra
- lines changed 930, context: html, text, full: html, text
change wrangler from Venkat to Fang, renaming wgEncodeLicrHistone.new.ra to wgEncodeLicrHistone.release2.ra, update trackDb.wgEncode.ra for this change
- lines changed 150, context: html, text, full: html, text
add age information to long label, modified short label to <=17 char long
- lines changed 1, context: html, text, full: html, text
remove strain from fileSorOrder as all the samples have the same strain
- lines changed 41, context: html, text, full: html, text
remove #autogenerated comment
- lines changed 1, context: html, text, full: html, text
add empty GEO_accession column, Morgan will request GEO_accession in batch later
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.new.ra
- lines changed 226, context: html, text, full: html, text
add age to short and long labels and make cell line name more numan readable in long labels
- lines changed 112, context: html, text, full: html, text
changed Sig to Sg, Aln to Al, 8W to 8wk in some short labels
- lines changed 1, context: html, text, full: html, text
add age, GEO_Accession to fileSortOrder
- lines changed 797, context: html, text, full: html, text
renaming wgEncodeLicrRnaSeq.new.ra to wgEncodeLicrRnaSeq.release2.ra, update trackDb.wgEncode.ra for this change
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html
- lines changed 115, context: html, text, full: html, text
added file wgEncodeLicrRnaSeq.release2.html which is a copy of wgEncodeLicrRnaSeq.html
- lines changed 5, context: html, text, full: html, text
In the Description paragraph, changed C57Bl/6 to C57BL/6added detailed mouse tissue, primary cell and their age group information.
- lines changed 8, context: html, text, full: html, text
added release note for release2
- lines changed 1, context: html, text, full: html, text
remove the space in the end of the release note
- lines changed 3, context: html, text, full: html, text
modified the release note to reflect the new experiments added since release 1
- lines changed 3, context: html, text, full: html, text
added the following notes to the Release Notes :\nThe row is changed to the subtrack list which is right below the configuration box in the Track Settings page.\nAge column is added to the subtrack list which is right below the configuration box in the Track Settings page.\nAge and GEO Accession columns are added to the downloadable file list in the Downloads page
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra
- lines changed 797, context: html, text, full: html, text
renaming wgEncodeLicrRnaSeq.new.ra to wgEncodeLicrRnaSeq.release2.ra, update trackDb.wgEncode.ra for this change
- lines changed 76, context: html, text, full: html, text
re-add strain to long lable which probably got removed after roll back
- lines changed 1, context: html, text, full: html, text
added 'html wgEncodeLicrRnaSeq.release2' to the composite stanza (top stanza)
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.new.ra
- lines changed 702, context: html, text, full: html, text
change wrangler from Venkat to Fang, renaming wgEncodeLicrTfbs.new.ra to wgEncodeLicrTfbs.release2.ra, update trackDb.wgEncode.ra for this change
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra
- lines changed 702, context: html, text, full: html, text
change wrangler from Venkat to Fang, renaming wgEncodeLicrTfbs.new.ra to wgEncodeLicrTfbs.release2.ra, update trackDb.wgEncode.ra for this change
- lines changed 125, context: html, text, full: html, text
modified shortLabel to have it's length<=17, add age information to long labels
- lines changed 13, context: html, text, full: html, text
remove #autogenerated comment
- lines changed 2, context: html, text, full: html, text
added age to sortOrder in tracking setting page; removed strain column from fileSortOrder in Downloads page as the experiments uses the same strain; added empty GEO_accession column to fileSortOrder in Downloads page, Morgan will request GEO_accession number in batch later
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