Commits for hiram
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v263_preview2 to v263_base (2011-02-07 to 2012-02-14) v263
- initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/mouse/mm10/description.html - lines changed 132, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/gap.html - lines changed 64, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/gold.html - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 8, context: html, text, full: html, text
- adding mm10 to the build
- src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
- update description and gold and gap pages to better match reality
- src/hg/makeDb/trackDb/mouse/mm10/description.html - lines changed 95, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/gap.html - lines changed 55, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/gold.html - lines changed 17, context: html, text, full: html, text
- adding mm10 definitions
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 20, context: html, text, full: html, text
- fixup UniGene cluster ID to remove Rn. from the name redmine 29
- src/hg/hgGene/rgdInfo.c - lines changed 1, context: html, text, full: html, text
- hDbExists is not the function to use to see if a Db exists, that is only for hgcentral
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
- hDbExists is only for assembly databases to see if they are in dbDb, to see if a database exists, use sqlDatabaseExists
- starting on 8-way multiz
- src/hg/makeDb/doc/fr3.txt - lines changed 84, context: html, text, full: html, text
- document upstreamGeneTbl choice
- src/hg/makeDb/doc/gorGor3.txt - lines changed 4, context: html, text, full: html, text
- indicate windowmaskerSdust feature bits result
- src/hg/makeDb/doc/latCha1.txt - lines changed 2, context: html, text, full: html, text
- getting ready to start genbank
- src/hg/makeDb/doc/mm10.txt - lines changed 260, context: html, text, full: html, text
- update image include and assembly description
- src/hg/makeDb/trackDb/fugu/fr3/description.html - lines changed 17, context: html, text, full: html, text
- correct plural word
- src/hg/utils/genomeQuality/genomeQuality.pl - lines changed 1, context: html, text, full: html, text
- mention fetchChromSizes in these usage messages, redmine 6844
- src/utils/bedGraphToBigWig/bedGraphToBigWig.c - lines changed 2, context: html, text, full: html, text
- src/utils/bedToBigBed/bedToBigBed.c - lines changed 2, context: html, text, full: html, text
- src/utils/wigToBigWig/wigToBigWig.c - lines changed 2, context: html, text, full: html, text
- set mm10.align.unplacedChroms = chr* since any of them can lift with the nonBridgedGap.lift file
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
- incorrect spelling of mm10.nonBrided.lift file
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
- Added mm10.
- src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
- done with mm9 to mm10 liftOver
- src/hg/makeDb/doc/mm9.txt - lines changed 20, context: html, text, full: html, text
- genbank, cpgIslandExt, microsat, blatservers, default position done, running genscan
- src/hg/makeDb/doc/mm10.txt - lines changed 204, context: html, text, full: html, text
- adding mm10 to the rules
- src/hg/makeDb/schema/all.joiner - lines changed 23, context: html, text, full: html, text
- genscan done, featureBits complete, and in the pushQ
- src/hg/makeDb/doc/mm10.txt - lines changed 94, context: html, text, full: html, text
- fixup select statement for allTranscriptQuery
- src/hg/near/hgNear/hgNearData/Rat/rn4/genome.ra - lines changed 1, context: html, text, full: html, text
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