4bb360f5b63ad116129e8063dc1d9c730cecdd89 larrym Tue Jan 24 12:04:16 2012 -0800 Load trackList only if we have to; this will speedup entry page (see #5675) diff --git src/hg/hgTracks/searchTracks.c src/hg/hgTracks/searchTracks.c index 768a99f..ed3b3ab 100644 --- src/hg/hgTracks/searchTracks.c +++ src/hg/hgTracks/searchTracks.c @@ -1,767 +1,767 @@ /* Track search code used by hgTracks CGI */ #include "common.h" #include "search.h" #include "hCommon.h" #include "memalloc.h" #include "obscure.h" #include "dystring.h" #include "hash.h" #include "cheapcgi.h" #include "hPrint.h" #include "htmshell.h" #include "cart.h" #include "hgTracks.h" #include "web.h" #include "jksql.h" #include "hdb.h" #include "mdb.h" #include "fileUi.h" #include "trix.h" #include "jsHelper.h" #include "imageV2.h" #define TRACK_SEARCH_FORM "trackSearch" #define SEARCH_RESULTS_FORM "searchResults" #define TRACK_SEARCH_CURRENT_TAB "tsCurTab" #define TRACK_SEARCH_SIMPLE "tsSimple" #define TRACK_SEARCH_ON_NAME "tsName" #define TRACK_SEARCH_ON_TYPE "tsType" #define TRACK_SEARCH_ON_GROUP "tsGroup" #define TRACK_SEARCH_ON_DESCR "tsDescr" #define TRACK_SEARCH_SORT "tsSort" static int gCmpGroup(const void *va, const void *vb) /* Compare groups based on label. */ { const struct group *a = *((struct group **)va); const struct group *b = *((struct group **)vb); return strcmp(a->label, b->label); } // Would like to do a radio button choice ofsorts enum sortBy { sbRelevance=0, sbAbc =1, sbHierarchy=2, }; static int gCmpTrackHierarchy(const void *va, const void *vb) /* Compare tracks based on longLabel. */ { const struct slRef *aa = *((struct slRef **)va); const struct slRef *bb = *((struct slRef **)vb); const struct track *a = ((struct track *) aa->val); const struct track *b = ((struct track *) bb->val); if ( tdbIsFolder(a->tdb) && !tdbIsFolder(b->tdb)) return -1; else if (!tdbIsFolder(a->tdb) && tdbIsFolder(b->tdb)) return 1; if ( tdbIsContainer(a->tdb) && !tdbIsContainer(b->tdb)) return -1; else if (!tdbIsContainer(a->tdb) && tdbIsContainer(b->tdb)) return 1; if (!tdbIsContainerChild(a->tdb) && tdbIsContainerChild(b->tdb)) return -1; else if ( tdbIsContainerChild(a->tdb) && !tdbIsContainerChild(b->tdb)) return 1; return strcasecmp(a->longLabel, b->longLabel); } static int gCmpTrack(const void *va, const void *vb) /* Compare tracks based on longLabel. */ { const struct slRef *aa = *((struct slRef **)va); const struct slRef *bb = *((struct slRef **)vb); const struct track *a = ((struct track *) aa->val); const struct track *b = ((struct track *) bb->val); return strcasecmp(a->longLabel, b->longLabel); } static void findTracksSort(struct slRef **pTrack, enum sortBy sortBy) { if (sortBy == sbHierarchy) slSort(pTrack, gCmpTrackHierarchy); else if (sortBy == sbAbc) slSort(pTrack, gCmpTrack); else slReverse(pTrack); } static int getFormatTypes(char ***pLabels, char ***pTypes) { char *crudeTypes[] = { ANYLABEL, "bam", "psl", "chain", "netAlign", "maf", "bed", "bigBed", "ctgPos", "expRatio", "genePred", "broadPeak", "narrowPeak", "rmsk", "bedGraph", "bigWig", "wig", "wigMaf" }; // Non-standard: // type altGraphX // type axt // type bed5FloatScore // type bed5FloatScoreWithFdr // type chromGraph // type clonePos // type coloredExon // type encodeFiveC // type factorSource // type ld2 // type logo // type maf // type sample // type wigMafProt 0.0 1.0 char *nicerTypes[] = { ANYLABEL, "Alignment binary (bam) - binary SAM", "Alignment Blast (psl) - Blast output", "Alignment Chains (chain) - Pairwise alignment", "Alignment Nets (netAlign) - Net alignments", "Alignments (maf) - multiple alignment format", "bed - browser extensible data", "bigBed - self index, often remote bed format", "ctgPos - Contigs", "expRatio - Expression ratios", "Genes (genePred) - Gene prediction and annotation", "Peaks Broad (broadPeak) - ENCODE large region peak format", "Peaks Narrow (narrowPeak) - ENCODE small region peak format", "Repeats (rmsk) - Repeat masking", "Signal (bedGraph) - graphically represented bed data", "Signal (bigWig) - self index, often remote wiggle format", "Signal (wig) - wiggle format", "Signal (wigMaf) - multiple alignment wiggle" }; int ix = 0, count = sizeof(crudeTypes)/sizeof(char *); char **labels; char **values; AllocArray(labels, count); AllocArray(values, count); for(ix=0;ix<count;ix++) { labels[ix] = cloneString(nicerTypes[ix]); values[ix] = cloneString(crudeTypes[ix]); } *pLabels = labels; *pTypes = values; return count; } static struct slRef *simpleSearchForTracksstruct(char *simpleEntry) // Performs the simple search and returns the found tracks. { struct slRef *tracks = NULL; // Prepare for trix search if (!isEmpty(simpleEntry)) { int trixWordCount = 0; char *tmp = cloneString(simpleEntry); char *val = nextWord(&tmp); struct slName *el, *trixList = NULL; while (val != NULL) { slNameAddTail(&trixList, val); trixWordCount++; val = nextWord(&tmp); } if (trixWordCount > 0) { // Unfortunately trixSearch can't handle the slName list int i; char **trixWords = needMem(sizeof(char *) * trixWordCount); for(i = 0, el = trixList; el != NULL; i++, el = el->next) trixWords[i] = strLower(el->name); // Now open the trix file char trixFile[HDB_MAX_PATH_STRING]; getSearchTrixFile(database, trixFile, sizeof(trixFile)); struct trix *trix = trixOpen(trixFile); struct trixSearchResult *tsList; for(tsList = trixSearch(trix, trixWordCount, trixWords, TRUE); tsList != NULL; tsList = tsList->next) { struct track *track = (struct track *) hashFindVal(trackHash, tsList->itemId); if (track != NULL) // It is expected that this is NULL (e.g. when the trix references trackDb tracks which have no tables) { refAdd(&tracks, track); } } //trixClose(trix); // don't bother (this is a CGI that is about to end) } } return tracks; } static struct slRef *advancedSearchForTracks(struct sqlConnection *conn,struct group *groupList, char *nameSearch, char *typeSearch, char *descSearch, char *groupSearch, struct slPair *mdbPairs) // Performs the advanced search and returns the found tracks. { int tracksFound = 0; struct slRef *tracks = NULL; int numMetadataNonEmpty = 0; struct slPair *pair = mdbPairs; for (; pair!= NULL;pair=pair->next) { if (!isEmpty((char *)(pair->val))) numMetadataNonEmpty++; } if(!isEmpty(groupSearch) && sameString(groupSearch,ANYLABEL)) groupSearch = NULL; if(!isEmpty(typeSearch) && sameString(typeSearch,ANYLABEL)) typeSearch = NULL; if(isEmpty(nameSearch) && isEmpty(typeSearch) && isEmpty(descSearch) && isEmpty(groupSearch) && numMetadataNonEmpty == 0) return NULL; // First do the metaDb searches, which can be done quickly for all tracks with db queries. struct hash *matchingTracks = NULL; if (numMetadataNonEmpty) { struct mdbObj *mdbObj, *mdbObjs = mdbObjRepeatedSearch(conn,mdbPairs,TRUE,FALSE); if (mdbObjs) { for (mdbObj = mdbObjs; mdbObj != NULL; mdbObj = mdbObj->next) { if (matchingTracks == NULL) matchingTracks = newHash(0); hashAddInt(matchingTracks, mdbObj->obj, 1); } mdbObjsFree(&mdbObjs); } if (matchingTracks == NULL) return NULL; } // Set the word lists up once struct slName *nameList = NULL; if (!isEmpty(nameSearch)) nameList = slNameListOfUniqueWords(cloneString(nameSearch),TRUE); // TRUE means respect quotes struct slName *descList = NULL; if (!isEmpty(descSearch)) descList = slNameListOfUniqueWords(cloneString(descSearch),TRUE); struct group *group; for (group = groupList; group != NULL; group = group->next) { if(isEmpty(groupSearch) || sameString(group->name, groupSearch)) { if (group->trackList == NULL) continue; struct trackRef *tr; for (tr = group->trackList; tr != NULL; tr = tr->next) { struct track *track = tr->track; char *trackType = cloneFirstWord(track->tdb->type); // will be spilled if ((matchingTracks == NULL || hashLookup(matchingTracks, track->track) != NULL) && (isEmpty(typeSearch) || (sameWord(typeSearch, trackType) && !tdbIsComposite(track->tdb))) && (isEmpty(nameSearch) || searchNameMatches(track->tdb, nameList)) && (isEmpty(descSearch) || searchDescriptionMatches(track->tdb, descList))) { if (track != NULL) { tracksFound++; refAdd(&tracks, track); } else warn("found group track is NULL."); } if (track->subtracks != NULL) { struct track *subTrack; for (subTrack = track->subtracks; subTrack != NULL; subTrack = subTrack->next) { trackType = cloneFirstWord(subTrack->tdb->type); // will be spilled if ((matchingTracks == NULL || hashLookup(matchingTracks, subTrack->track) != NULL) && (isEmpty(typeSearch) || sameWord(typeSearch, trackType)) && (isEmpty(nameSearch) || searchNameMatches(subTrack->tdb, nameList)) && (isEmpty(descSearch) // subtracks inherit description || searchDescriptionMatches(subTrack->tdb, descList) || (tdbIsCompositeChild(subTrack->tdb) && subTrack->parent && searchDescriptionMatches(subTrack->parent->tdb, descList)))) { if (track != NULL) { tracksFound++; refAdd(&tracks, subTrack); } else warn("found subtrack is NULL."); } } } } } } return tracks; } #define MAX_FOUND_TRACKS 100 static void findTracksPageLinks(int tracksFound, int startFrom) { if (tracksFound <= MAX_FOUND_TRACKS) return; // Opener int willStartAt = 0; int curPage = (startFrom/MAX_FOUND_TRACKS) + 1; int endAt = startFrom+MAX_FOUND_TRACKS; if (endAt > tracksFound) endAt = tracksFound; hPrintf("<span><em style='font-size:.9em;'>Listing %d - %d of %d tracks</em> ",startFrom+1,endAt,tracksFound); // << and < if (startFrom >= MAX_FOUND_TRACKS) { hPrintf("<a href='../cgi-bin/hgTracks?%s=Search&%s=0' title='First page of found tracks' onclick='return findTracks.page(\"%s\",0);'>«</a> ", TRACK_SEARCH,TRACK_SEARCH_PAGER,TRACK_SEARCH_PAGER); willStartAt = startFrom - MAX_FOUND_TRACKS; hPrintf(" <a href='../cgi-bin/hgTracks?%s=Search&%s=%d' title='Previous page of found tracks' onclick='return findTracks.page(\"%s\",%d);'>‹</a> ", TRACK_SEARCH,TRACK_SEARCH_PAGER,willStartAt,TRACK_SEARCH_PAGER,willStartAt); } // page number links int lastPage = (tracksFound/MAX_FOUND_TRACKS); if ((tracksFound % MAX_FOUND_TRACKS) > 0) lastPage++; int thisPage = curPage - 3; // Window of 3 pages above and below if (thisPage < 1) thisPage = 1; for (;thisPage <= lastPage && thisPage <= curPage + 3; thisPage++) { if (thisPage != curPage) { willStartAt = ((thisPage - 1) * MAX_FOUND_TRACKS); endAt = willStartAt+ MAX_FOUND_TRACKS; if (endAt > tracksFound) endAt = tracksFound; hPrintf(" <a href='../cgi-bin/hgTracks?%s=Search&%s=%d' title='Page %d (%d - %d) tracks' onclick='return findTracks.page(\"%s\",%d);'>%d</a> ", TRACK_SEARCH,TRACK_SEARCH_PAGER,willStartAt,thisPage,willStartAt+1,endAt,TRACK_SEARCH_PAGER,willStartAt,thisPage); } else hPrintf(" <em style='color:%s;'>%d</em> ",COLOR_DARKGREY,thisPage); } // > and >> if ((startFrom + MAX_FOUND_TRACKS) < tracksFound) { willStartAt = startFrom + MAX_FOUND_TRACKS; hPrintf(" <a href='../cgi-bin/hgTracks?%s=Search&%s=%d' title='Next page of found tracks' onclick='return findTracks.page(\"%s\",%d);'>›</a> ", TRACK_SEARCH,TRACK_SEARCH_PAGER,willStartAt,TRACK_SEARCH_PAGER,willStartAt); willStartAt = tracksFound - (tracksFound % MAX_FOUND_TRACKS); if (willStartAt == tracksFound) willStartAt -= MAX_FOUND_TRACKS; hPrintf(" <a href='../cgi-bin/hgTracks?%s=Search&%s=%d' title='Last page of found tracks' onclick='return findTracks.page(\"%s\",%d);'>»</a></span>\n", TRACK_SEARCH,TRACK_SEARCH_PAGER,willStartAt,TRACK_SEARCH_PAGER,willStartAt); } } static void displayFoundTracks(struct cart *cart, struct slRef *tracks, int tracksFound,enum sortBy sortBy) // Routine for displaying found tracks { hPrintf("<div id='found' style='display:none;'>\n"); // This div allows the clear button to empty it if(tracksFound < 1) { hPrintf("<p>No tracks found</p>\n"); } else { struct hash *tdbHash = makeTrackHash(database, chromName); hPrintf("<form action='%s' name='%s' id='%s' method='post'>\n\n", hgTracksName(),SEARCH_RESULTS_FORM,SEARCH_RESULTS_FORM); cartSaveSession(cart); // Creates hidden var of hgsid to avoid bad voodoo int startFrom = 0; hPrintf("<table id='foundTracks'>\n"); // Opening view in browser button and foundTracks count #define ENOUGH_FOUND_TRACKS 10 if(tracksFound >= ENOUGH_FOUND_TRACKS) { hPrintf("<tr><td nowrap colspan=3>\n"); hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='return to browser' class='viewBtn' style='font-size:.8em;'>"); hPrintf(" <span class='selCbCount'></span>\n"); startFrom = cartUsualInt(cart,TRACK_SEARCH_PAGER,0); if (startFrom > 0 && startFrom < tracksFound) { int countUp = 0; for(countUp=0; countUp < startFrom;countUp++) { if (slPopHead(&tracks) == NULL) // memory waste break; } } hPrintf("</td><td align='right' valign='bottom'>\n"); findTracksPageLinks(tracksFound,startFrom); hPrintf("</td></tr>\n"); } // Begin foundTracks table //hPrintf("<table id='foundTracks'><tr><td colspan='2'>\n"); hPrintf("<tr><td colspan='2'>\n"); hPrintf("</td><td align='right'>\n"); hPrintf("</td></tr><tr bgcolor='#%s'><td>",HG_COL_HEADER); #ifdef BUTTONS_BY_CSS #define BUTTON_PM "<span class='pmButton' onclick='findTracks.checkAllWithWait(%s)' title='%s all found tracks'>%c</span>" hPrintf(BUTTON_PM,"true", "Select",'+'); hPrintf(BUTTON_PM,"false","Unselect",'-'); #else///ifndef BUTTONS_BY_CSS #define PM_BUTTON "<IMG height=18 width=18 onclick=\"return findTracks.checkAllWithWait(%s);\" id='btn_%s' src='../images/%s' title='%s all found tracks'>" hPrintf(PM_BUTTON,"true", "plus_all", "add_sm.gif", "Select"); hPrintf(PM_BUTTON,"false","minus_all","remove_sm.gif","Unselect"); #endif///ndef BUTTONS_BY_CSS hPrintf("</td><td><b>Visibility</b></td><td colspan=2> <b>Track Name</b>\n"); // Sort options? if(tracksFound >= ENOUGH_FOUND_TRACKS) { hPrintf("<span style='float:right;'>Sort:"); cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "0", (sortBy == sbRelevance),"onclick=\"findTracks.sortNow(this);\""); hPrintf("by Relevance"); cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "1", (sortBy == sbAbc), "onclick=\"findTracks.sortNow(this);\""); hPrintf("Alphabetically"); cgiMakeOnClickRadioButton(TRACK_SEARCH_SORT, "2",(sortBy == sbHierarchy), "onclick=\"findTracks.sortNow(this);\""); hPrintf("by Hierarchy </span>\n"); } hPrintf("</td></tr>\n"); // Set up json for js functionality struct jsonHashElement *jsonTdbVars = newJsonHash(newHash(8)); int trackCount=0; boolean containerTrackCount = 0; struct slRef *ptr; while((ptr = slPopHead(&tracks))) { if(++trackCount > MAX_FOUND_TRACKS) break; struct track *track = (struct track *) ptr->val; jsonTdbSettingsBuild(jsonTdbVars, track, FALSE); // FALSE: No configuration from track search if (tdbIsFolder(track->tdb)) // supertrack hPrintf("<tr class='bgLevel4' valign='top' class='found'>\n"); else if (tdbIsContainer(track->tdb)) hPrintf("<tr class='bgLevel3' valign='top' class='found'>\n"); else hPrintf("<tr class='bgLevel2' valign='top' class='found'>\n"); hPrintf("<td align='center'>\n"); // Determine visibility and checked state track->visibility = tdbVisLimitedByAncestors(cart, track->tdb, TRUE, TRUE); boolean checked = ( track->visibility != tvHide ); if(tdbIsContainerChild(track->tdb)) { checked = fourStateVisible(subtrackFourStateChecked(track->tdb,cart)); // Don't need all 4 states here. Visible=checked&&enabled checked = (checked && ( track->visibility != tvHide )); // Checked is only if subtrack level vis is also set! } // Setup the check box #define CB_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s_sel' VALUE='%s'>" if (tdbIsContainerChild(track->tdb) || tdbIsFolderContent(track->tdb)) // subtracks and folder children get "_sel" var. ("_sel" var is temporary on folder children) hPrintf(CB_HIDDEN_VAR,track->track,checked?"1":CART_VAR_EMPTY); #define CB_SEEN "<INPUT TYPE=CHECKBOX id='%s_sel_id' VALUE='on' class='selCb' onclick='findTracks.clickedOne(this,true);'%s>" hPrintf(CB_SEEN,track->track,(checked?" CHECKED":"")); hPrintf("</td><td>\n"); // Setup the visibility drop down #define VIS_HIDDEN_VAR "<INPUT TYPE=HIDDEN disabled=true NAME='%s' VALUE='%s'>" hPrintf(VIS_HIDDEN_VAR,track->track,CART_VAR_EMPTY); // All tracks get vis hidden var char extra[512]; if (tdbIsFolder(track->tdb)) { safef(extra,sizeof(extra),"id='%s_id' onchange='findTracks.changeVis(this)'",track->track); hideShowDropDownWithClassAndExtra(track->track, (track->visibility != tvHide), "normalText visDD",extra); } else { safef(extra,sizeof(extra),"id='%s_id' onchange='findTracks.changeVis(this)'",track->track); hTvDropDownClassWithJavascript(NULL, track->visibility,track->canPack,"normalText seenVis",extra); } // If this is a container track, allow configuring... if (tdbIsContainer(track->tdb) || tdbIsFolder(track->tdb)) { containerTrackCount++; // Using onclick ensures return to search tracks on submit hPrintf(" <IMG SRC='../images/folderWrench.png' style='cursor:pointer;' title='Configure this track container...' onclick='findTracks.configSet(\"%s\");'> ", track->track); } //#define SHOW_PARENT_FOLDER #ifdef SHOW_PARENT_FOLDER else if (tdbIsContainerChild(track->tdb) || tdbIsFolderContent(track->tdb)) { struct trackDb *parentTdb = tdbIsContainerChild(track->tdb) ? tdbGetContainer(track->tdb) : tdbGetImmediateFolder(track->tdb); if (parentTdb != NULL) // Using href will not return to search tracks on submit hPrintf(" <A HREF='../cgi-bin/hgTrackUi?g=%s'><IMG SRC='../images/folderC.png' title='Navigate to parent container...'></A> ", parentTdb->track); } #endif///def SHOW_PARENT_FOLDER hPrintf("</td>\n"); // shortLabel has description popup and longLabel has "..." metadata hPrintf("<td><a target='_top' onclick=\"popUp.hgTrackUi('%s',true); return false;\" href='%s' title='Display track details'>%s</a></td>\n", track->track, trackUrl(track->track, NULL), track->shortLabel); hPrintf("<td>%s", track->longLabel); compositeMetadataToggle(database, track->tdb, NULL, TRUE, FALSE, tdbHash); hPrintf("</td></tr>\n"); } //hPrintf("</table>\n"); // Closing view in browser button and foundTracks count hPrintf("<tr><td nowrap colspan=3>"); hPrintf("<INPUT TYPE=SUBMIT NAME='submit' VALUE='Return to Browser' class='viewBtn' style='font-size:.8em;'>"); hPrintf(" <span class='selCbCount'></span>"); if(tracksFound >= ENOUGH_FOUND_TRACKS) { hPrintf("</td><td align='right' valign='top'>\n"); findTracksPageLinks(tracksFound,startFrom); hPrintf("</td></tr>\n"); } hPrintf("</table>\n"); if(containerTrackCount > 0) hPrintf("<BR><IMG SRC='../images/folderWrench.png'> Tracks so marked are containers which group related data tracks. Containers may need additional configuration (by clicking on the <IMG SRC='../images/folderWrench.png'> icon) before they can be viewed in the browser.<BR>\n"); //hPrintf("* Tracks so marked are containers which group related data tracks. These may not be visible unless further configuration is done. Click on the * to configure these.<BR><BR>\n"); hPrintf("\n</form>\n"); // be done with json jsonTdbSettingsUse(jsonTdbVars); } hPrintf("</div>"); // This div allows the clear button to empty it } void doSearchTracks(struct group *groupList) { webIncludeResourceFile("ui.dropdownchecklist.css"); jsIncludeFile("ui.dropdownchecklist.js",NULL); // This line is needed to get the multi-selects initialized jsIncludeFile("ddcl.js",NULL); struct group *group; char *groups[128]; char *labels[128]; int numGroups = 1; groups[0] = ANYLABEL; labels[0] = ANYLABEL; char *nameSearch = cartOptionalString(cart, TRACK_SEARCH_ON_NAME); char *typeSearch = cartUsualString( cart, TRACK_SEARCH_ON_TYPE,ANYLABEL); char *simpleEntry = cartOptionalString(cart, TRACK_SEARCH_SIMPLE); char *descSearch = cartOptionalString(cart, TRACK_SEARCH_ON_DESCR); char *groupSearch = cartUsualString( cart, TRACK_SEARCH_ON_GROUP,ANYLABEL); -boolean doSearch = sameString(cartOptionalString(cart, TRACK_SEARCH), "Search") || cartUsualInt(cart, TRACK_SEARCH_PAGER, -1) >= 0; +boolean doSearch = sameWord(cartString(cart, TRACK_SEARCH), "Search") || cartUsualInt(cart, TRACK_SEARCH_PAGER, -1) >= 0; struct sqlConnection *conn = hAllocConn(database); boolean metaDbExists = sqlTableExists(conn, "metaDb"); int tracksFound = 0; boolean searchTermsExist = FALSE; int cols; char buf[512]; char *currentTab = cartUsualString(cart, TRACK_SEARCH_CURRENT_TAB, "simpleTab"); enum searchTab selectedTab = (sameString(currentTab, "advancedTab") ? advancedTab : simpleTab); if(selectedTab == simpleTab && !isEmpty(simpleEntry)) // NOTE: could support quotes in simple tab by detecting quotes and choosing to use doesNameMatch() || doesDescriptionMatch() stripChar(simpleEntry, '"'); -trackList = getTrackList(&groupList, -2); // global -makeGlobalTrackHash(trackList); - -// NOTE: This is necessary when container cfg by '*' results in vis changes -// This will handle composite/view override when subtrack specific vis exists, AND superTrack reshaping. -parentChildCartCleanup(trackList,cart,oldVars); // Subtrack settings must be removed when composite/view settings are updated - -slSort(&groupList, gCmpGroup); -for (group = groupList; group != NULL; group = group->next) - { - groupTrackListAddSuper(cart, group); - if (group->trackList != NULL) - { - groups[numGroups] = cloneString(group->name); - labels[numGroups] = cloneString(group->label); - numGroups++; - if (numGroups >= ArraySize(groups)) - internalErr(); - } - } - safef(buf, sizeof(buf),"Search for Tracks in the %s %s Assembly", organism, hFreezeFromDb(database)); webStartWrapperDetailedNoArgs(cart, database, "", buf, FALSE, FALSE, FALSE, FALSE); hPrintf("<div style='max-width:1080px;'>"); hPrintf("<form action='%s' name='%s' id='%s' method='get'>\n\n", hgTracksName(),TRACK_SEARCH_FORM,TRACK_SEARCH_FORM); cartSaveSession(cart); // Creates hidden var of hgsid to avoid bad voodoo safef(buf, sizeof(buf), "%lu", clock1()); cgiMakeHiddenVar("hgt_", buf); // timestamps page to avoid browser cache hPrintf("<input type='hidden' name='db' value='%s'>\n", database); hPrintf("<input type='hidden' name='%s' id='currentTab' value='%s'>\n", TRACK_SEARCH_CURRENT_TAB, currentTab); hPrintf("<input type='hidden' name='%s' value=''>\n",TRACK_SEARCH_DEL_ROW); hPrintf("<input type='hidden' name='%s' value=''>\n",TRACK_SEARCH_ADD_ROW); hPrintf("<input type='hidden' name='%s' value=''>\n",TRACK_SEARCH_PAGER); hPrintf("<div id='tabs' style='display:none; %s'>\n" "<ul>\n" "<li><a href='#simpleTab'><B style='font-size:.9em;font-family: arial, Geneva, Helvetica, san-serif;'>Search</B></a></li>\n" "<li><a href='#advancedTab'><B style='font-size:.9em;font-family: arial, Geneva, Helvetica, san-serif;'>Advanced</B></a></li>\n" "</ul>\n" "<div id='simpleTab' style='max-width:inherit;'>\n",cgiBrowser()==btIE?"width:1060px;":"max-width:inherit;"); hPrintf("<table id='simpleTable' style='width:100%%; font-size:.9em;'><tr><td colspan='2'>"); hPrintf("<input type='text' name='%s' id='simpleSearch' class='submitOnEnter' value='%s' style='max-width:1000px; width:100%%;' onkeyup='findTracks.searchButtonsEnable(true);'>\n", TRACK_SEARCH_SIMPLE,simpleEntry == NULL ? "" : simpleEntry); if (selectedTab==simpleTab && simpleEntry) searchTermsExist = TRUE; hPrintf("</td></tr><td style='max-height:4px;'></td></tr></table>"); //hPrintf("</td></tr></table>"); hPrintf("<input type='submit' name='%s' id='searchSubmit' value='search' style='font-size:.8em;'>\n", TRACK_SEARCH); hPrintf("<input type='button' name='clear' value='clear' class='clear' style='font-size:.8em;' onclick='findTracks.clear();'>\n"); hPrintf("<input type='submit' name='submit' value='cancel' class='cancel' style='font-size:.8em;'>\n"); hPrintf("</div>\n"); // Advanced tab hPrintf("<div id='advancedTab' style='width:inherit;'>\n" "<table id='advancedTable' cellSpacing=0 style='width:inherit; font-size:.9em;'>\n"); cols = 8; // Track Name contains hPrintf("<tr><td colspan=3></td>"); hPrintf("<td nowrap><b style='max-width:100px;'>Track Name:</b></td>"); hPrintf("<td align='right'>contains</td>\n"); hPrintf("<td colspan='%d'>", cols - 4); hPrintf("<input type='text' name='%s' id='nameSearch' class='submitOnEnter' value='%s' onkeyup='findTracks.searchButtonsEnable(true);' style='min-width:326px; font-size:.9em;'>", TRACK_SEARCH_ON_NAME, nameSearch == NULL ? "" : nameSearch); hPrintf("</td></tr>\n"); // Description contains hPrintf("<tr><td colspan=2></td><td align='right'>and </td>"); hPrintf("<td><b style='max-width:100px;'>Description:</b></td>"); hPrintf("<td align='right'>contains</td>\n"); hPrintf("<td colspan='%d'>", cols - 4); hPrintf("<input type='text' name='%s' id='descSearch' value='%s' class='submitOnEnter' onkeyup='findTracks.searchButtonsEnable(true);' style='max-width:536px; width:536px; font-size:.9em;'>", TRACK_SEARCH_ON_DESCR, descSearch == NULL ? "" : descSearch); hPrintf("</td></tr>\n"); if (selectedTab==advancedTab && !isEmpty(descSearch)) searchTermsExist = TRUE; hPrintf("<tr><td colspan=2></td><td align='right'>and </td>\n"); hPrintf("<td><b style='max-width:100px;'>Group:</b></td>"); hPrintf("<td align='right'>is</td>\n"); hPrintf("<td colspan='%d'>", cols - 4); cgiMakeDropListFull(TRACK_SEARCH_ON_GROUP, labels, groups, numGroups, groupSearch, "class='groupSearch' style='min-width:40%; font-size:.9em;'"); hPrintf("</td></tr>\n"); if (selectedTab==advancedTab && !isEmpty(groupSearch) && !sameString(groupSearch,ANYLABEL)) searchTermsExist = TRUE; // Track Type is (drop down) hPrintf("<tr><td colspan=2></td><td align='right'>and </td>\n"); hPrintf("<td nowrap><b style='max-width:100px;'>Data Format:</b></td>"); hPrintf("<td align='right'>is</td>\n"); hPrintf("<td colspan='%d'>", cols - 4); char **formatTypes = NULL; char **formatLabels = NULL; int formatCount = getFormatTypes(&formatLabels, &formatTypes); cgiMakeDropListFull(TRACK_SEARCH_ON_TYPE, formatLabels, formatTypes, formatCount, typeSearch, "class='typeSearch' style='min-width:40%; font-size:.9em;'"); hPrintf("</td></tr>\n"); if (selectedTab==advancedTab && !isEmpty(typeSearch) && !sameString(typeSearch,ANYLABEL)) searchTermsExist = TRUE; // mdb selects struct slPair *mdbSelects = NULL; if(metaDbExists) { struct slPair *mdbVars = mdbVarsSearchable(conn,TRUE,FALSE); // Tables but not file only objects mdbSelects = mdbSelectPairs(cart, mdbVars); char *output = mdbSelectsHtmlRows(conn,mdbSelects,mdbVars,cols,FALSE); // not a fileSearch if (output) { puts(output); freeMem(output); } slPairFreeList(&mdbVars); } hPrintf("</table>\n"); hPrintf("<input type='submit' name='%s' id='searchSubmit' value='search' style='font-size:.8em;'>\n", TRACK_SEARCH); hPrintf("<input type='button' name='clear' value='clear' class='clear' style='font-size:.8em;' onclick='findTracks.clear();'>\n"); hPrintf("<input type='submit' name='submit' value='cancel' class='cancel' style='font-size:.8em;'>\n"); //hPrintf("<a target='_blank' href='../goldenPath/help/trackSearch.html'>help</a>\n"); hPrintf("</div>\n"); hPrintf("</div>\n"); hPrintf("</form>\n"); hPrintf("</div>"); // Restricts to max-width:1000px; cgiDown(0.8); if (measureTiming) measureTime("Rendered tabs"); if(doSearch) { // Now search struct slRef *tracks = NULL; + trackList = getTrackList(&groupList, -2); // global + makeGlobalTrackHash(trackList); + + // NOTE: This is necessary when container cfg by '*' results in vis changes + // This will handle composite/view override when subtrack specific vis exists, AND superTrack reshaping. + parentChildCartCleanup(trackList,cart,oldVars); // Subtrack settings must be removed when composite/view settings are updated + + slSort(&groupList, gCmpGroup); + for (group = groupList; group != NULL; group = group->next) + { + groupTrackListAddSuper(cart, group); + if (group->trackList != NULL) + { + groups[numGroups] = cloneString(group->name); + labels[numGroups] = cloneString(group->label); + numGroups++; + if (numGroups >= ArraySize(groups)) + internalErr(); + } + } + if(selectedTab==simpleTab && !isEmpty(simpleEntry)) tracks = simpleSearchForTracksstruct(simpleEntry); else if(selectedTab==advancedTab) tracks = advancedSearchForTracks(conn,groupList,nameSearch,typeSearch,descSearch,groupSearch,mdbSelects); if (measureTiming) measureTime("Searched for tracks"); // Sort and Print results if(selectedTab!=filesTab) { enum sortBy sortBy = cartUsualInt(cart,TRACK_SEARCH_SORT,sbRelevance); tracksFound = slCount(tracks); if(tracksFound > 1) findTracksSort(&tracks,sortBy); displayFoundTracks(cart,tracks,tracksFound,sortBy); if (measureTiming) measureTime("Displayed found tracks"); } slPairFreeList(&mdbSelects); } hFreeConn(&conn); webNewSection("About Track Search"); if(metaDbExists) hPrintf("<p>Search for terms in track names, descriptions, groups, and ENCODE " "metadata. If multiple terms are entered, only tracks with all terms " "will be part of the results."); else hPrintf("<p>Search for terms in track descriptions, groups, and names. " "If multiple terms are entered, only tracks with all terms " "will be part of the results."); hPrintf("<BR><a target='_blank' href='../goldenPath/help/trackSearch.html'>more help</a></p>\n"); // NOTE: Could use ajax and dynamically popup the html file in a box: //hPrintf("<BR><a href='#' onclick=\"retrieveHtml('../goldenPath/help/trackSearch.html'); return false;\">more help</a></p>\n"); // NOTE: OR by declaring a div and passing it to retrieveHtml, the html file could be embedded in the div. // However, this is not desired here because of the titles. //hPrintf("<BR><a href='#' onclick=\"retrieveHtml('../goldenPath/help/trackSearch.html',$('#moreHelp'),true); return false;\">more help</a></p>\n"); //hPrintf("<div id='moreHelp'></div>\n"); webEndSectionTables(); }