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UCSC Genome Browser Project Staff:
-
Jim Kent: Research Scientist,
- co-PI and architect of UCSC Genome Browser and
+ Co-PI and Architect of UCSC Genome Browser and
ENCODE DCC projects.
Design and implementation of the
Genome Browser and the
BLAT
sequence search tool. Author of the
the UCSC Genes annotations,
the Gene Sorter,
VisiGene,
Genome Graphs, chaining
and netting programs,
bigWig and bigBed formats, the
In Silico PCR tool, and the
GigAssembler.
-
Galt Barber:
- Genome Browser and ENCODE DCC engineering.
+ Genome Browser and ENCODE DCC Engineer.
-
Hiram Clawson:
- Genome Browser engineering. Wiki support,
+ Genome Browser Engineer. Wiki support,
mirror and licensing technical support, modENCODE.
-
Melissa Cline:
- ENCODE DCC and Genome Browser engineering.
+ ENCODE DCC and Genome Browser Engineer.
-
Mark Diekhans:
- Genome Browser technical engineering lead. Gencode,
- CCDS, MGC projects. Genome Browser GenBank data
- pipeline. PhD student.
+ Tecnical Project Manager, Engineer, PhD student.
+ Gencode, CCDS, and MGC projects, author of Genome
+ Browser GenBank data pipeline.
-
Tim Dreszer:
- ENCODE DCC and Genome Browser engineering.
+ ENCODE DCC and Genome Browser Engineer.
+
-
+ Ruihua Fang:
+ ENCODE DCC Biological Data Engineer.
-
Pauline Fujita:
Genome Browser QA, mailing list support.
-
Mary Goldman:
- Genome Browser QA, mailing list support.
+ Genome Browser and Cancer Browser QA, mailing list
+ support.
-
Luvina Guruvadoo:
Genome Browser QA, mailing list support.
-
Rachel Harte:
Gencode, CCDS, MGC curation.
-
Steve Heitner:
Genome Browser QA, mailing list support.
-
Angie Hinrichs:
- Genome Browser engineering, SNPs and variation data,
+ Genome Browser Engineer, SNPs and variation data,
modENCODE.
-
Fan Hsu:
- Genome Browser engineering. Director of Proteomics. GSID.
+ Genome Browser Engineer. Director of Proteomics. GSID.
-
Donna Karolchik:
Genome Browser program and engineering management,
documentation, web content, Genome Browser licensing.
-
Robert Kuhn:
- Genome Browser associate director, QA manager,
- training and outreach.
+ Genome Browser Associate Director, training and outreach
+ program.
-
Katrina Learned:
- ENCODE DCC QA lead, Genome Browser QA, mailing list
- support.
+ Genome Browser QA Manager, Genome Browser and ENCODE QA.
-
Chin Li:
- Genome Browser engineering.
+ Genome Browser Engineer.
-
Venkat Malladi:
- ENCODE DCC biological data technician.
+ ENCODE DCC Biological Data Technician.
-
Larry Meyer:
- Genome Browser and ENCODE DCC engineering.
+ Genome Browser and ENCODE DCC Engineer.
-
Thomas Pringle:
Genome Browser technical advisor and power user.
-
Brian Raney:
- Genome Browser and ENCODE DCC engineering.
+ Genome Browser and ENCODE DCC Engineer.
-
Brooke Rhead:
- Genome Browser QA lead, mailing list support.
+ Genome Browser QA Lead, mailing list support.
-
Greg Roe:
Genome Browser QA, mailing list support.
-
Kate Rosenbloom:
- ENCODE DCC technical project manager. Genome Browser
- engineering.
+ ENCODE DCC Technical Project Manager, Genome Browser
+ and ENCODE DCC Engineer.
-
Cricket Alicia Sloan:
- ENCODE DCC biological data technician.
+ ENCODE DCC Team Coordinator, ENCODE DCC Biological Data
+ Technician.
-
Vanessa Swing:
ENCODE DCC and Genome Browser QA, mailing list support.
-
Matt Wong:
- ENCODE DCC biological data technician.
+ ENCODE DCC Biological Data Technician.
-
Ann Zweig:
- Genome Browser technical project manager, mailing list manager.
+ Genome Browser Technical Project Manager, mailing list
+ coordinator.
- Post-docs and Graduate Students (Browser-related support):
+ Postdocs and Graduate Students (Browser-related support):
-
- Steve Benz:
- Graduate student - Cancer genomics browser.
+ Max Haeussler:
+ Postdoc - Tools to mine online biomedical articles and
+ documents for DNA/protein sequence and map to genomes.
+
-
+ Karen Hayden:
+ Postdoc - Characterization and annotation of human
+ centromeric regions in genome.
-
Jeff Long:
Graduate student - Assistance with ENCODE DCC
data wrangling.
-
Morgan Maddren:
Undergraduate student - Assistance with ENCODE DCC
data wrangling.
-
- Benedict Paten:
- Graduate student - ENCODE DAC, comparative genomics and
- evolutionary analysis.
-
-
- Krishna Roskin:
- PhD - ENCODE DCC GEO support, Phylogenetic analysis, Genome
- Browser database support, early Table Browser support.
-
-
- Zack Sanborn:
- Graduate student - Cancer genomics browser.
-
-
-
- Jing Zhu:
- Cancer genomics browser project manager.
+ Max Nash:
+ Undergraduate student - Assistance with ENCODE DCC
+ data wrangling.
+
-
+ Zheng-Willy Zhang:
+ Undergraduate student - Assistance with ENCODE DCC
+ data wrangling.
Systems Administration Staff:
-
Jorge Garcia:
- Systems administrator.
+ Systems Administrator.
-
Gary Moro:
- Systems administrator.
+ Systems Administrator.
-
Erich Weiler:
- Systems administrator.
+ Systems Administrator.
-
Truman Chan:
- Student systems administrator.
+ Student Systems Administrator.
Center for Biomolecular Science and Engineering
(CBSE) Staff:
-
David Haussler: CBSE Director, HHMI
- investigator, co-PI of UCSC Genome Browser project.
+ investigator, Co-PI of UCSC Genome Browser project.
-
Ann Pace:
CBSE Associate Director.
-
Lynn Brazil:
Executive Assistant.
-
Rochelle Fuller:
Administrative Specialist.
-
Nadine Gassner:
- CBSE Grant Program Administrator.
+ Grant Program Administrator.
-
Danielle Gomez:
- CBSE Administrative Assistant/Receptionist.
+ Administrative Assistant/Receptionist.
-
Zia Isola:
Associate Director for CBSE Diversity Programs.
-
- Susan Rose:
- Temporary Administrative Staff.
+ Lilia Sandoval:
+ Administrative Assistant.
-
Kelly Sauder:
Financial Specialist.
-
Branwyn Wagman:
Associate Director for Operations and Communications.
We gratefully acknowledge the help of project alumni
- Robert Baertsch, Gill Bejerano, Mathieu Blanchette,
- Brenna Candelaria, Mike Chalup, Chad
+ Robert Baertsch, Steve Benz, Gill Bejerano, Mathieu
+ Blanchette, Brenna Candelaria, Mike Chalup, Chad
Chen, Ron Chao, Vege Clerisse, Antonio Coelho, Jenny Draper,
- Phoenix Eagleshadow, Katy Elliott, Terry Furey, Patrick Gavin, Rob Gravell,
- Jennifer Jackson, Scot Kennedy, Andy Kern, Victoria Lin, Nick Littlestone,
- Craig Lowe, Yontao Lu, Crystal Lynch, Jian Ma, Chester Manuel, Jakob
- Pedersen,
+ Phoenix Eagleshadow, Katy Elliott, Terry Furey,
+ Patrick Gavin, Rob Gravell, Jennifer Jackson, Scot Kennedy,
+ Andy Kern, Victoria Lin, Nick Littlestone,
+ Craig Lowe, Yontao Lu, Crystal Lynch, Jian Ma, Chester
+ Manuel, Jakob Pedersen,
Mike Pheasant, Andy Pohl, Katie Pollard, Ruth Rabinowitz,
- Sanja Rogic, Matt Schwartz, Adam Siepel, Kayla Smith,
- Chuck Sugnet,
+ Sanja Rogic, Susan Rose, Krishna Roskin, Zack Sanborn, Matt
+ Schwartz, Adam Siepel, Kayla Smith, Chuck Sugnet,
Bernard Suh, Ali Sultan-Qurraie, Paul Tatarksy,
Archana Thakkapallayil, Daryl Thomas, Aaron Tomb,
Heather Trumbower, Sandra Walton, Ting Wang,
Ryan Weber, Alexander Wolfe, Wei Wu, Matt Xia, Chen-Hsiang
Yeang, and Degui Zhi.
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