Commits for hiram

v263_preview to v263_preview2 (2012-01-31 to 2011-02-07) v263

• different location to avoid duplicate html page for custom track bedDetail
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text
• addComma becomes addCommaSpace
  • src/hg/hgGene/synonym.c - lines changed 19, context: html, text, full: html, text
• checking in rgdGene2 search specs
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra - lines changed 18, context: html, text, full: html, text
• cleaning rgdGene2ToUniProt table
  • src/hg/makeDb/doc/rn4.txt - lines changed 217, context: html, text, full: html, text
• cleaning old instructions for cleaning rgdGene2ToUniProt table
  • src/hg/makeDb/doc/rn4.txt - lines changed 118, context: html, text, full: html, text
• trying to resolve conflict
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra - lines changed 18, context: html, text, full: html, text
• checking in Fan's branch for the rgdGene2 update
  • src/hg/hgGene/hgGeneData/Rat/genome.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Rat/links.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Rat/rn3/genome.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Rat/rn4/genome.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Rat/rn4/links.ra - lines changed 92, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Rat/rn4/section.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/otherOrgs.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/pathways.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/rgdGene2.html - lines changed 22, context: html, text, full: html, text
  • src/hg/near/hgNear/hgNearData/Rat/rn4/columnDb.ra - lines changed 165, context: html, text, full: html, text
  • src/hg/near/hgNear/hgNearData/Rat/rn4/genome.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/near/hgNear/hgNearData/Rat/rn4/orderDb.ra - lines changed 27, context: html, text, full: html, text
• one last bit of catch up for rgdGene2 checkin
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra - lines changed 12, context: html, text, full: html, text
• hTableExists fails when the db does not exist, eliminate dependency on hgFixed existing for cutters data from hgFixed and trackVersion table in hgFixed
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/ensFace.c - lines changed 1, context: html, text, full: html, text
• starting mm10, now running repeat masker and window masker, simple repeats are done
  • src/hg/makeDb/doc/mm10.txt - lines changed 534, context: html, text, full: html, text