e7f828d1d1d15fe187a2cb9a241dee10874af38f
mmaddren
  Mon Feb 6 13:35:15 2012 -0800
cvValidate updated for new cv spec
diff --git python/lib/ucscgenomics/geo.py python/lib/ucscgenomics/geo.py
index 7a6efd6..1dc6c03 100644
--- python/lib/ucscgenomics/geo.py
+++ python/lib/ucscgenomics/geo.py
@@ -1,20 +1,20 @@
 import urllib2, re, datetime
 
 # if the molecule is RNA, we need to map our data into !Sample_molecule, which only takes certain fields
 # first we check rnaExtractMapping. If its not there, we use the localization. This is because (at current)
-# polyA is the most important trait, otherwise its going to be nonPolyA which GEO doesn't accept that. 
+# polyA is the most important trait, otherwise its going to be nonPolyA which GEO doesn't accept. 
 rnaExtractMapping = {
     'shortPolyA': 'polyA RNA', 
     'longPolyA': 'polyA RNA', 
     'polyA': 'polyA RNA'
 }
 
 localizationMapping = {
     'cytosol': 'cytoplasmic RNA', 
     'polysome': 'cytoplasmic RNA',
     'membraneFraction': 'cytoplasmic RNA',
     'mitochondria': 'cytoplasmic RNA',
     'nucleus': 'nuclear RNA', 
     'nucleolus': 'nuclear RNA', 
     'nucleoplasm': 'nuclear RNA', 
     'nuclearMatrix': 'nuclear RNA',