13db05916455fc43b3c007d9265887772e20e127
mmaddren
  Mon Jan 30 12:39:22 2012 -0800
added optional label for all stanzas in CV, and dataGroup mandatory for dataType
diff --git python/programs/cvValidate/cvValidate python/programs/cvValidate/cvValidate
index db2051f..2633d33 100755
--- python/programs/cvValidate/cvValidate
+++ python/programs/cvValidate/cvValidate
@@ -1,34 +1,34 @@
 #!/hive/groups/encode/dcc/bin/python
 import sys
 import argparse
 from ucscgenomics import cv
 
 class validate(object):
-	"""validation script that calls cv.validate and then puts all its errors into a list"""
+    '''validation script that calls cv.validate and then puts all its errors into a list'''
 
 	def __init__(self):
 	
 		parser = argparse.ArgumentParser(description = 'Validates the controlled vocabulary file')
 		parser.add_argument('-c', '--cvPath', help='Overrides the default cv path ~/kent/src/hg/makeDb/trackDb/cv/alpha/cv.ra')
 		parser.add_argument('-p', '--protocolPath', help='Overrides the default protocol path ~/htdocsExtras/ENCODE/')
 		parser.add_argument('-l', '--loose', action='store_true', default=False, help='Suppress all warnings, only display breaking errors')
 		
 		args = parser.parse_args(sys.argv[1:])
         
         self.loose = args.loose
 		self.errors = list()
 		self.cv = cv.CvFile(args.cvPath, self.addtoerrs, args.protocolPath)	
 		self.cv.validate()
 		
         
 		for err in self.errors:
 			print err
 			
 	def addtoerrs(self, exception):
         if not self.loose or exception.strict:
             self.errors.append(exception)
 
 if __name__ == '__main__':
     val = validate()