Commits for vsmalladi
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v263_preview to v263_preview2 (2012-01-31 to 2011-02-07) v263
- Removed WC+ from labProtocolId string, based on lab information. Redmine #5986.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 97, context: html, text, full: html, text
- Update freeze date to be ENCODE Mar 2012 Freeze. Redmine #6581.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechHist.ra - lines changed 64, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechTfbs.ra - lines changed 124, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 97, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra - lines changed 376, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra - lines changed 115, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 248, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 293, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 239, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHist.ra - lines changed 28, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhRnaSeq.ra - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 323, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 85, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 486, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 206, context: html, text, full: html, text
- 1. Removed old RA stanzas that were resubmitted and object name was changed. Redmine #111.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 19, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 19, context: html, text, full: html, text
- Updated DAF to have all views. Added new view PrimerPeaks for Peaks determined at primer level. Also added validte None for Primer. Redmine #225.
- src/hg/encode/DAFs/3.0/hg19/wgEncodeUmassDekker5C.daf - lines changed 24, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
- Added back composite level meta-data was typed incorrectly in commit 66cb88518473df9e9dbc818fe28bd1eefed69a2e.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 6, context: html, text, full: html, text
- Removed errant stanza object wgEncodeCshlLongRnaSeqq.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 6, context: html, text, full: html, text
- Removed required tags in the DAF, this allows for views such as Primers not being required for each Cell type. Also fixed spelling of bed 12. Redmine #225.
- src/hg/encode/DAFs/3.0/hg19/wgEncodeUmassDekker5C.daf - lines changed 6, context: html, text, full: html, text
- Added None as a valid term for region, as some files are not region specific. Redmine #225.
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
- Added 18 experiments for track. Redmine #5986.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 2989, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.ra - lines changed 487, context: html, text, full: html, text
- Removed extra stanza that should be commented out. Redmine #6798.
- src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 6, context: html, text, full: html, text
- Added two new views Contigs and TranscriptDeNovo. Redmine #5986.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 14, context: html, text, full: html, text
- Removed required for views to allow partial submissions. Redmine #5986.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 8, context: html, text, full: html, text
- Redmine #111
1. Reworded sentence "and interpret these as DNA sequences" -> "and interpreted as DNA sequences"
2. Added semicolon in second sentence of Peaks section in Display Conventions and Configuration
3. Made Credits section plural changed "was" -> "were"
4. Added period for Journal titles. Also italicized "et al." in Reference section
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 17, context: html, text, full: html, text
- Redmine #110
1. Reworded sentence "and interpret these as DNA sequences" -> "and interpreted as DNA sequences"
2. Added semicolon in second sentence of Peaks section in Display Conventions and Configuration
3. Made Credits section plural changed "was" -> "were"
4. Added period for Journal titles.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html - lines changed 18, context: html, text, full: html, text
- Redmine #111. 4. Fixed spacing between semicolons and italisize et al. and period after journal name.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 2, context: html, text, full: html, text
- Redmine #111. Forgot to close italics.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 1, context: html, text, full: html, text
- Redmine #110. 4. Fixed spacing between semicolons and italisize et al. and period after journal name.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html - lines changed 5, context: html, text, full: html, text
- Redmine #111. 5. Updated 2 links that were being redirected.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 4, context: html, text, full: html, text
- Redmine #111. Moved period out of hyperlink for Weiss track.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 1, context: html, text, full: html, text
- Fixed DAF to require replciates for Alignments. Redmine #4156.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechRnaSeq.daf - lines changed 2, context: html, text, full: html, text
- Added 3 new treatments for Snyder/Struhl lab
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 18, context: html, text, full: html, text
- Removed the duplication of a 36hr 1 uM treatment registration.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
- Added first experiments to track. Redmine #4156.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 210, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.ra - lines changed 91, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
- After tallking with the lab decided to changed type for contigs from bigBed to bedRnaElements. Redmine #5986.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 2, context: html, text, full: html, text
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