33a7f9d512c35cea0076b5b9e1cbd605e00143d2
kuhn
  Wed Feb 29 10:58:10 2012 -0800
added snp135 annoucement and archived one other
diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html
index 37f6afd..6cb1f2e 100644
--- src/hg/htdocs/indexNews.html
+++ src/hg/htdocs/indexNews.html
@@ -14,30 +14,72 @@
                     </TD></TR></TABLE>
                 </TD></TR></TABLE>
                 <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0>
                     <TR><TH HEIGHT=3></TH></TR>
                     <TR><TD WIDTH=10></TD>
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                     <P>
                     To receive announcements of new genome 
                     assembly releases, new software features, updates and 
                     training seminars by email, subscribe to the
                     <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" 
                     TARGET=_blank>genome-announce</A> mailing list.</P>
 
             
             <!-- start news -->
+                 <FONT FACE="courier" SIZE="3"><B>10 February 2012 
+                 - dbSNP 135 Available for hg19</B></FONT>
+                 <P>We are pleased to announce the release of four tracks derived 
+                 from dbSNP build 135, available on the human assembly (GRCh37/hg19). 
+                 dbSNP build 135 is available at NCBI. The new tracks contain 
+                 additional annotation data not included in previous dbSNP tracks, 
+                 with corresponding coloring and filtering options in the Genome 
+                 Browser.
+                 </P>
+                 <P>
+                 As for dbSNP build 132, there are four tracks in this release. 
+                 One is a track containing all mappings of reference SNPs to the 
+                 human assembly, labeled "All SNPs (135)". The other three tracks 
+                 are subsets of this track and show interesting and easily defined 
+                 subsets of dbSNP:
+                 </P>
+
+                 <UL>
+                 <LI>Common SNPs (135): uniquely mapped variants that appear in 
+                 at least 1% of the population
+                 <LI>Flagged SNPs (135): uniquely mapped variants, excluding 
+                 Common SNPs, that have been flagged by dbSNP as "clinically 
+                 associated"
+                 <LI>Mult. SNPs (135): variants that have been mapped to more 
+                 than one genomic location
+                 </UL>
+
+                 <P>By default, only the Common SNPs (135) are visible; other 
+                 tracks must be made visible using the track controls.
+                 </P>
+
+                 <P>You will find the four SNPs (135) tracks on the Human Feb. 
+                 2009 (GRCh37/hg19) browser in the "Variation and Repeats" group.
+                 </P>
+
+                 </P> Many thanks to dbSNP at NCBI for the data, and to 
+                 Mary-Claire King at the University of Washington for helpful 
+                 comments that motivated us to enhance our dbSNP annotations. The 
+                 tracks were produced at UCSC by Angie Hinrichs and Brooke Rhead.
+                 </P>
+
+            <!-- more news -->
                     <FONT FACE="courier" SIZE="3"><B>2 February 2012 - New UCSC 
 		    Genes Track Released for GRCh37/hg19</B></FONT>
                     <P>
 		    We're happy to announce the release of an updated UCSC Genes
 		    track for the GRCh37/hg19 human Genome Browser. This release
 		    includes more noncoding transcripts based on data from 
 		    <A HREF="http://rfam.sanger.ac.uk/" TARGET=_blank>Rfam</A> 
 		    and from the 
 		    <A HREF="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=tRNAs">tRNA Genes track</A> 
 		    contributed by the <A HREF="http://lowelab.ucsc.edu/" 
 		    TARGET=_blank>Todd Lowe lab</A> at UCSC.
 		    <P>
 		    The new release has 80,922 total transcripts, compared with 
 		    77,614 in the previous version. The total number of 
 		    canonical genes has increased from 27,297 to 31,227. 
@@ -65,31 +107,32 @@
 		    We changed the way that gene symbols are assigned to 
 		    transcripts so that names from curated sources are favored 
 		    over names coming directly from GenBank mRNA records. This 
 		    change resolved several confusing naming issues reported to 
 		    us by users.
 		    <LI>We tracked down and corrected a bug in the pipeline that
 		    was causing a number of poor quality protein mappings to 
 		    displace high quality protein mappings.
 		    <LI>We have started producing two new tables, 
 		    knownGeneTxMrna and knownGeneTxPep, that contain sequence 
 		    derived from the genome rather than from the mRNA used for 
 		    the transcript.
 		    </UL>
 		    <P>
 		    More details about the new UCSC Genes track can be found on the 
-		    <A HREF="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=knownGene">UCSC Genes track description page</A>.
+		    <A HREF="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=knownGene">UCSC 
+                    Genes track description page</A>.
 		    <P>
 		    Many thanks to Melissa Cline, Jim Kent, Brian Raney, Mark 
 		    Diekhans, and Brooke Rhead for their work on this track!
 		    <P>
 		    <HR>
 		  
             <!-- start archives -->
                    <FONT FACE="courier" SIZE="3"><B>23 January 2012 - Wallaby 
 		   Browser Available: </B></FONT>
                    We have released a Genome Browser for the September 2009
                    genome assembly of the Tammar Wallaby, <em>Macropus 
                    eugenii</em> (TWGS version Meug_1.1, UCSC version macEug2).
                    <A HREF="goldenPath/newsarch.html#230112">Read more</A>.
 		   <P>
 		   <FONT FACE="courier" SIZE="3"><B>3 January 2012 - Roadmap