File Changes for cricket

v264_preview to v264_preview2 (2012-02-21 to 2012-02-28) v264

• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    Fixed the doc to document and removed rnaExtract as a variable for short
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    Fixed the doc to document and removed rnaExtract as a variable for short
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 23, context: html, text, full: html, text
    Changing tier to be non-cv determined
  • lines changed 37, context: html, text, full: html, text
    Removing the term species from the CV as it is really assembly, removing the one reference to species in hg18
  • lines changed 49, context: html, text, full: html, text
    Removing Gene Type with comments, see ticket #5111
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeNhgriBip.ra
  • lines changed 2, context: html, text, full: html, text
    Removing the term species from the CV as it is really assembly, removing the one reference to species in hg18
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHmm.ra
  • lines changed 10, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 3520, context: html, text, full: html, text
    Changing the defualts on this track
  • lines changed 919, context: html, text, full: html, text
    Added 5 more experiments
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 5855, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra
  • lines changed 15, context: html, text, full: html, text
    Cleaning out freeze date from GENCODE files, they do not want to have ENCODE Versions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV9.ra
  • lines changed 16, context: html, text, full: html, text
    Cleaning out freeze date from GENCODE files, they do not want to have ENCODE Versions
  • lines changed 1, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 4, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 8, context: html, text, full: html, text
    Getting rid of the post Freeze dates
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 534, context: html, text, full: html, text
    Adding the TSSHMM as displayed view, and fixing the release3.html line
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/wgEncodeChromSuper.new.html
  • lines changed 77, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 644, context: html, text, full: html, text
    Changing the defualts on this track
  • lines changed 433, context: html, text, full: html, text
    Added 5 more experiments
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html
  • lines changed 8, context: html, text, full: html, text
    Release notes and a long label change for Steve ticket 1634
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.ra
  • lines changed 1, context: html, text, full: html, text
    Release notes and a long label change for Steve ticket 1634
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
  • lines changed 145, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
  • lines changed 3590, context: html, text, full: html, text
    Adding a release 3 for CSHL Short with many new cell lines
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 577, context: html, text, full: html, text
    Adding the TSSHMM as displayed view, and fixing the release3.html line
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.html
  • lines changed 164, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra
  • lines changed 277, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.html
  • lines changed 87, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.ra
  • lines changed 1475, context: html, text, full: html, text
    Extra .new files
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    Removing species as a metaDb var, see ticket 5111