Commits for wong
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v264_preview to v264_preview2 (2012-02-21 to 2012-02-28) v264
- fixed some last second short labels
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 4, context: html, text, full: html, text
- renaming the bisulfite track
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.html - lines changed 61, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.ra - lines changed 84, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylWgbs.html - lines changed 61, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylWgbs.ra - lines changed 84, context: html, text, full: html, text
- changed incldue for WGBS
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- moving sydh histone to new release tag convention
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.html - lines changed 174, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 516, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.html - lines changed 174, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.ra - lines changed 516, context: html, text, full: html, text
- moved duke affy exon to new convention for release tag
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.html - lines changed 102, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.new.ra - lines changed 900, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html - lines changed 102, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.ra - lines changed 900, context: html, text, full: html, text
- fixing md5sum gzip bug
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromSynth.ra - lines changed 18, context: html, text, full: html, text
- temporary release notes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.html - lines changed 3, context: html, text, full: html, text
- cleaned up test WGBS track
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylWgbs.ra - lines changed 60, context: html, text, full: html, text
- trackDb.wgEncode.ra fix for duke affy exon
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- moving haib mehtyl rrbs to rlease 3 tags
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html - lines changed 121, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 1875, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html - lines changed 121, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra - lines changed 1875, context: html, text, full: html, text
- fixed temporary release notes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html - lines changed 2, context: html, text, full: html, text
- moved mapability to new release tags
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.ra - lines changed 137, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.html - lines changed 137, context: html, text, full: html, text
- moving open Chrom faire to release tags
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.new.ra - lines changed 694, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html - lines changed 307, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.ra - lines changed 694, context: html, text, full: html, text
- trackDb fix for openchrom faire
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- moved uw5c to release tag conventions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.new.ra - lines changed 12, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.html - lines changed 131, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.ra - lines changed 12, context: html, text, full: html, text
- include statement for 5c
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- properly moving mapability name to release tag convention
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.html - lines changed 146, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.html - lines changed 177, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.ra - lines changed 137, context: html, text, full: html, text
- short and long labels in trackDb, freeze date in etmaDb for haib rna seq fixes.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 78, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 40, context: html, text, full: html, text
- qa fixes to html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 16, context: html, text, full: html, text
- fixed genode misspelling
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 1, context: html, text, full: html, text
- turned show names for alignments to off
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 2, context: html, text, full: html, text
- fixed usage
- src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 3, context: html, text, full: html, text
- fixing md5sums for uw dgf and open chro synth, staging on beta
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeOpenChromSynth.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDgf.ra - lines changed 98, context: html, text, full: html, text
- Revert "fixing md5sums for uw dgf and open chro synth, staging on beta"
This reverts commit c1596ce2a293cd85862df52171dab56432a6ae5f.
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeOpenChromSynth.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDgf.ra - lines changed 98, context: html, text, full: html, text
- expids for uw tfbs
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 25, context: html, text, full: html, text
- fixed short and long labels
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.ra - lines changed 277, context: html, text, full: html, text
- removed bad track in trackDb
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.ra - lines changed 7, context: html, text, full: html, text
- forgot parenthesis
- python/lib/ucscgenomics/mkChangeNotes.py - lines changed 2, context: html, text, full: html, text
- fixed misspelled gencode
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 1, context: html, text, full: html, text
- fixed label in matrix and log and short
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 41, context: html, text, full: html, text
- changed some error handling stuff in mkChangeNotes, and made revoked gbdbs removed from the changed gbdbs list
- python/lib/ucscgenomics/mkChangeNotes.py - lines changed 7, context: html, text, full: html, text
- entity in label, ebcause underscores get translated into spaces by cgi
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- added in naming convention for BAM reads
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 5, context: html, text, full: html, text
- added in expIds and dccAcceession
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 309, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 429, context: html, text, full: html, text
- regenerated notes
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeOpenChromDnase.release2.notes - lines changed 908, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwTfbs.release3.notes - lines changed 64, context: html, text, full: html, text
- reordered treatments
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- fixed some qa stuff, removed replicate link for cv, and makde rep multi select
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 3, context: html, text, full: html, text
- release notes 2 first draft
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.html - lines changed 10, context: html, text, full: html, text
- corrections requested by others
- src/hg/encode/encodeQaInit/encodeQaInit - lines changed 9, context: html, text, full: html, text
- made it so that suthor count can be defined on commant line
- src/hg/encode/qaAddTrackReferences/qaAddTrackReferences - lines changed 11, context: html, text, full: html, text
- fixed gzip md5sum bug
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 202, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 409, context: html, text, full: html, text
- removed the parental cell lines for ones with donors
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.ra - lines changed 36, context: html, text, full: html, text
- changed post ENCDOE Jan 2011 Freeze to ENCODE Mar 2012 Freeze
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 64, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylArray.ra - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 233, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra - lines changed 121, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra - lines changed 43, context: html, text, full: html, text
- fixed link at terry's request
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html - lines changed 1, context: html, text, full: html, text
- Revert "fixed link at terry's request"
This reverts commit b4e1b70c8476a11f71d048e6221a26fe4a2135a2.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html - lines changed 1, context: html, text, full: html, text
- setting up patch for mapability html change
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.patch.html - lines changed 146, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.patch.ra - lines changed 137, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.html - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.ra - lines changed 1, context: html, text, full: html, text
- Mapability track is done, no need for release 4
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.html - lines changed 146, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.release4.ra - lines changed 137, context: html, text, full: html, text
- fixed the enw fiels mail to also have file size
- src/hg/encode/encodeQaInit/encodeQaInit - lines changed 7, context: html, text, full: html, text
- fixed some long labels that need to be patched in
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.patch.ra - lines changed 870, context: html, text, full: html, text
- fixing md5sums for open Chrom Faire
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 81, context: html, text, full: html, text
- fixed determined by qA
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra - lines changed 8, context: html, text, full: html, text
- fixes to uw tfbs html for QA
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html - lines changed 11, context: html, text, full: html, text
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