Commits for fang

v265_preview2 to v265_base (2012-03-20 to 2012-03-27) v265

• change viewLimit from 0:50 to 2:50 to see whether this could eliminate the problem in dense mode, see Katrina's point 12 in note 72 of ticket #6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra - lines changed 1, context: html, text, full: html, text
• change viewLimit back to 0:50 as the previous did not have any effects
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra - lines changed 1, context: html, text, full: html, text
• fixing Katrina's points 5, 15 in notes 78, ticket #6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html - lines changed 2, context: html, text, full: html, text
• remove the bullet point
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html - lines changed 3, context: html, text, full: html, text
• fixed Jacob's point 3, 6, 7
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.html - lines changed 6, context: html, text, full: html, text
• fixed Jacob't point 4, #5393
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.html - lines changed 1, context: html, text, full: html, text
• fix those old references not using the same format as those generated by qaAddTrackReferences
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.html - lines changed 75, context: html, text, full: html, text
• testing bigbed for hg19, gencode combine search results GM12878IngelCytosol
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.ra - lines changed 11, context: html, text, full: html, text
• clean up description, references, config
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 2, context: html, text, full: html, text
• fixed points raised by Katrina in #6476 note 54 which are similar to these two tracks and by Jacob see #5393, note 130
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.html - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra - lines changed 2, context: html, text, full: html, text
• correcting matrix cheked box see Jacob's point 2 note 131 in #5393
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra - lines changed 1, context: html, text, full: html, text
• fix long labels according to Katrina's suggestions in LicrRnaSeq where the length fit in with the limitation of 86 chr maximum
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 14, context: html, text, full: html, text
• change immortalized to immortal cells
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 15, context: html, text, full: html, text
• fixed long labels according to Katrina's point 1, note 54, #6476 for LicrRnaSeq, which are similar
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra - lines changed 98, context: html, text, full: html, text
• fix long label to <=80, see Steve's note 140 #5393
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 125, context: html, text, full: html, text
• fixed longLabel to <=80 chr long
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.ra - lines changed 5, context: html, text, full: html, text
• fixt longLabel changed 8wks to 8w
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.ra - lines changed 119, context: html, text, full: html, text