Commits for hiram

v265_preview2 to v265_base (2012-03-20 to 2012-03-27) v265

• lastz runs done for susScr2 vicPac1 turTru1 tupBel1 equCab2 oryCun2 cavPor3
  • src/hg/makeDb/doc/cavPor3.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/equCab2.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/oryCun2.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/susScr2.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/tupBel1.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/turTru1.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/vicPac1.txt - lines changed 21, context: html, text, full: html, text
• fixup chrM coordinates on hg19
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 18, context: html, text, full: html, text
• documentating windowmasker binary build
  • src/hg/makeDb/doc/windowMasker.txt - lines changed 35, context: html, text, full: html, text
• finished lastz for ailMel1 pteVam1 loxAfr3 canFam3 felCat4
  • src/hg/makeDb/doc/mm10.txt - lines changed 25, context: html, text, full: html, text
• window masker done, gaps done, repeat masker almost done
  • src/hg/makeDb/doc/rn5.txt - lines changed 86, context: html, text, full: html, text
• starting lastz for dasNov2 myoLuc2 bosTau7 oviAri1 proCap1
  • src/hg/makeDb/doc/mm10.txt - lines changed 291, context: html, text, full: html, text
• starting lastz runs on sorAra1 eriEur1 ochPri2 echTel1 and macEug2
  • src/hg/makeDb/doc/mm10.txt - lines changed 304, context: html, text, full: html, text
• finished with bosTau7 lastz
  • src/hg/makeDb/doc/mm10.txt - lines changed 5, context: html, text, full: html, text
• adding placental chain net composite
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.chainNet.ra - lines changed 258, context: html, text, full: html, text
• done with masking and created lineage specific repeats
  • src/hg/makeDb/doc/rn5.txt - lines changed 129, context: html, text, full: html, text
• completed proCap1 sorAra1 eriEur1 echTel1 macEug2 ochPri2
  • src/hg/makeDb/doc/mm10.txt - lines changed 113, context: html, text, full: html, text