0513e85cc01843ecc411b86dfce9180a8d1acf37 max Thu Mar 22 17:40:16 2012 -0700 make individual sequences for publications track clickable, show alignments, correct mouseOvers // Also changs text that is shown for PDF Output in hgTracks (see email with Ann/Donna/Brian) diff --git src/hg/hgTracks/hgTracks.h src/hg/hgTracks/hgTracks.h index 4786ac2..56c51bc 100644 --- src/hg/hgTracks/hgTracks.h +++ src/hg/hgTracks/hgTracks.h @@ -681,30 +681,33 @@ /* Use big-bed summary data to quickly draw bigBed. */ void adjustBedScoreGrayLevel(struct trackDb *tdb, struct bed *bed, int scoreMin, int scoreMax); /* For each distinct trackName passed in, check cart for trackName.minGrayLevel; if * that is different from the gray level implied by scoreMin's place in [0..scoreMax], * then linearly transform bed->score from the range of [scoreMin,scoreMax] to * [(cartMinGrayLevel*scoreMax)/maxShade,scoreMax]. * Note: this assumes that scoreMin and scoreMax are constant for each track. */ struct linkedFeatures *lfFromBedExtra(struct bed *bed, int scoreMin, int scoreMax); /* Return a linked feature from a (full) bed. */ struct linkedFeatures *lfFromBed(struct bed *bed); /* Return a linked feature from a (full) bed. */ +void loadSimpleBedAsLinkedFeaturesPerBase(struct track *tg); +/* bed list not freed as pointer to it is stored in 'original' field */ + void loadSimpleBed(struct track *tg); /* Load the items in one track - just move beds in * window... */ void loadBed8(struct track *tg); /* Convert bed 8 info in window to linked feature. */ void loadBed9(struct track *tg); /* Convert bed 9 info in window to linked feature. (to handle itemRgb)*/ void loadGappedBed(struct track *tg); /* Convert bed info in window to linked feature. */ void linkedFeaturesFreeList(struct linkedFeatures **pList); /* Free up a linked features list. */