Commits for vsmalladi

v265_preview2 to v265_base (2012-03-20 to 2012-03-27) v265

• Performed a little renaming in anticipation of data being replaced.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 268, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 46, context: html, text, full: html, text
• Updated DAF to not have required views.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeUwRnaSeq.daf - lines changed 6, context: html, text, full: html, text
• Added 3 treatments for UW Stam data.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 15, context: html, text, full: html, text
• Added provisional tags and fixed minor spelling errors.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Fixed tags to be alphanumeric since only numeric tags break javascript. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 7, context: html, text, full: html, text
• Updated object names for Plus and Minus Raw Signal to use the appropriate abbreviations.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 259, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 108, context: html, text, full: html, text
• Replaced Signal data on recomendation from lab. Redmine #4469.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra - lines changed 388, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 429, context: html, text, full: html, text
• Merge branch 'Development-Mouse'
• Fixed error in merge conflict that resulted in making File Type searchable. Redmine #7100.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 1, context: html, text, full: html, text
• Moved over approved changes to public. Redmine #7355.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 388, context: html, text, full: html, text
• Moved accession to dccInternalNotes. Redmine #7384.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 15, context: html, text, full: html, text
• Removed files referenced for submission 2972 that were never replaced.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 109, context: html, text, full: html, text
• Changed Hardison treatments to match differentiation registration.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 49, context: html, text, full: html, text
• Fixed truncated file, but loading newer version of the file. Redmine #131.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra - lines changed 25, context: html, text, full: html, text
• Corrected cell registration with treatment for G1E-ER4+E2 to be G1E-ER4. Redmine #7418.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 115, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 131, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.patch.ra - lines changed 499, context: html, text, full: html, text
• Merge branch 'Development-Mouse'
• Fixed broken links as well as removed GO term from label for type localization.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 12, context: html, text, full: html, text
• Added read type for PSU RNA-seq data.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 20, context: html, text, full: html, text
• Added in 3 new views for Mouse Transcriptome data.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 15, context: html, text, full: html, text
• First pass at DAF for track. Redmine #107.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodePsuRnaSeq.daf - lines changed 89, context: html, text, full: html, text