2a87341df47913f2d644293068bb2628d0677e88 luvina Wed Mar 7 10:13:25 2012 -0800 added mm10 announcement diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index c505dd9..f9d0ee0 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -14,75 +14,73 @@ </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> - <FONT FACE="courier" SIZE="3"><B>29 February 2012 - - RGD Genes available for rn4</B></FONT> - <P> - We are pleased to announce the release of RGD Genes for rat - (Baylor 3.4/rn4). This track shows protein-coding gene annotations - curated by <a href="http://rgd.mcw.edu/" target=_blank>RGD</a>. This track - replaces UCSC Known Genes as the main gene track for this assembly. - </P> - <P> - More details about this track can be found on the - <a href=" ../../cgi-bin/hgTrackUi?db=rn4&g=rgdGene2" target=_blank> - RGD Genes track description page</a>. - </P> - <P> - We'd like to thank RGD for providing the base annotations for this - track. The RGD Genes track was produced by Fan Hsu, Mary Goldman and - Hiram Clawson. - </P> - -<!-- Commenting out mouse update <FONT FACE="courier" SIZE="3"><B>05 March 2012 - New Mouse Browser Available</B></FONT> <P> We have released the latest Genome Browser for the December 2011 Mouse genome assembly produced by the <a href="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/" TARGET=_blank> - Mouse Genome Reference Consortium</a> (NCBI Build 38, UCSC version mm10). + Mouse Genome Reference Consortium</a> (Genome Reference Consortium GRCm38, UCSC version mm10). This version, which includes approximately 2.6 Gb of sequence, is considered to be "essentially complete". The assembly includes chromosomes 1-19, X, Y, M (mitochondrial DNA) and chr*_random (unlocalized) and chrUn_* (unplaced clone contigs). Note that the UCSC mm10 database contains only the reference strain C57BL/6J. <P> Bulk downloads of the sequence and annotation data are available via the Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/mm10/" TARGET=_blank>FTP server</a> or the <a href="http://hgdownload.cse.ucsc.edu/downloads.html#mouse" TARGET=_blank>Downloads</a> page. The Mouse browser annotation tracks were generated by UCSC and collaborators worldwide. See the <a href="http://hgwdev.cse.ucsc.edu/goldenPath/credits.html#mouse_credits" TARGET=_blank>Credits</a> page for a detailed list of the organizations and individuals who contributed to the success of this release. - --> <P> + + <FONT FACE="courier" SIZE="3"><B>29 February 2012 + - RGD Genes available for rn4</B></FONT> + <P> + We are pleased to announce the release of RGD Genes for rat + (Baylor 3.4/rn4). This track shows protein-coding gene annotations + curated by <a href="http://rgd.mcw.edu/" target=_blank>RGD</a>. This track + replaces UCSC Known Genes as the main gene track for this assembly. + </P> + <P> + More details about this track can be found on the + <a href=" ../../cgi-bin/hgTrackUi?db=rn4&g=rgdGene2" target=_blank> + RGD Genes track description page</a>. + </P> + <P> + We'd like to thank RGD for providing the base annotations for this + track. The RGD Genes track was produced by Fan Hsu, Mary Goldman and + Hiram Clawson. + </P> <HR> <!-- start archives --> <FONT FACE="courier" SIZE="3"><B>10 February 2012 - dbSNP 135 Available for hg19: </B></FONT> We are pleased to announce the release of four tracks derived from dbSNP build 135, available on the human assembly (GRCh37/hg19). <A HREF="goldenPath/newsarch.html#100212">Read more</A>. <P> <FONT FACE="courier" SIZE="3"><B>2 February 2012 - New UCSC Genes Track Released for GRCh37/hg19: </B></FONT> We're happy to announce the release of an updated UCSC Genes track for the GRCh37/hg19 human Genome Browser. <A HREF="goldenPath/newsarch.html#020212">Read more</A>.