c4500309e004c1ccdcf8741930bba103e7cd8631 max Mon Mar 12 13:14:39 2012 -0700 trying to make necessary changes to all.joiner and .sql files for qa diff --git src/hg/lib/t2gBlat.sql src/hg/lib/t2gBlat.sql new file mode 100644 index 0000000..404e815 --- /dev/null +++ src/hg/lib/t2gBlat.sql @@ -0,0 +1,19 @@ +#Text to Genome project feature table, in bed12+ format, additional field seqIds +CREATE TABLE `t2g` ( + `chrom` varchar(255) NOT NULL, # chromosome + `chromStart` int(10) unsigned NOT NULL, # start position on chromosome + `chromEnd` int(10) unsigned NOT NULL, # end position on chromosome + `name` varchar(255) NOT NULL, #name of feature + `score` int(10) unsigned NOT NULL, # score of feature + `strand` char(1) NOT NULL, # strand of feature + `thickStart` int(10) unsigned NOT NULL, # start of exons + `thickEnd` int(10) unsigned NOT NULL, #end of exons + `reserved` int(10) unsigned NOT NULL, # no clue + `blockCount` int(10) unsigned NOT NULL, # number of blocks + `blockSizes` longblob NOT NULL, # size of blocks + `chromStarts` longblob NOT NULL, # A comma-separated list of block starts + `seqIds` longblob NOT NULL, # comma-separated list of sequenceIds used to generate this feature + KEY `name` (`name`(16)), + KEY `chrom` (`chrom`(6)), + KEY `chromStartAndName` (`chrom`(6), chromStart, name) +);