Commits for rhead

v264_base to v265_preview (2012-03-06 to 2012-03-13) v265

• Checking in runCheckHgFindSpec, which is running on the qateam crontab. Redmine #5880.
  • src/utils/qa/runCheckHgFindSpec - lines changed 29, context: html, text, full: html, text
• Added runCheckHgFindSpec to makefile.
  • src/utils/qa/makefile - lines changed 1, context: html, text, full: html, text
• Starting qaGbTracks, which will take a database and a list of tables and run applicable QA tests. It is intended to be a fast starting point for Genome Browser project track QA. So far, this is just a copy of qaEncodeTracks2 with some style adjustments. (Redmine #7224)
  • src/utils/qa/qaGbTracks - lines changed 82, context: html, text, full: html, text
• Added a new special case for rn4 (it now uses RGD Genes instead of a UCSC Genes build) and got rid of the checking the gdbPdb table to determine whether an assembly is a UCSC Genes assembly. Added a comment to the usage that the script should be checked to see if it is using up-to-date tables.
  • src/utils/qa/makeUniProtFile.csh - lines changed 15, context: html, text, full: html, text
• Added qaEncodeTracks2 and qaGbTracks to list of programs known to depend on qa.py.
  • python/lib/ucscgenomics/qa.py - lines changed 2, context: html, text, full: html, text