File Changes for fang

v265_preview to v265_preview2 (2012-03-13 to 2012-03-20) v265

• src/hg/makeDb/doc/encodeDccMm9/wgEncodeLicrHistone.release2.notes
  • lines changed 72, context: html, text, full: html, text
    add release2 notes file
  • lines changed 1120, context: html, text, full: html, text
    add correct notes
• src/hg/makeDb/doc/encodeDccMm9/wgEncodeLicrTfbs.release2.notes
  • lines changed 723, context: html, text, full: html, text
    creating notes file
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 574, context: html, text, full: html, text
    change controlId of a experiment from cell/Input/std to the dccAccession of its input(control) sample
  • lines changed 142, context: html, text, full: html, text
    added md5sums
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 345, context: html, text, full: html, text
    update controlId to the dccAccession number of the corresponding input(control) of the experiments.
  • lines changed 40, context: html, text, full: html, text
    added md5sums
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrHistone.release2.html
  • lines changed 66, context: html, text, full: html, text
    add new references for new histone modifications submitted
  • lines changed 1, context: html, text, full: html, text
    update release note
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html
  • lines changed 1, context: html, text, full: html, text
    update release note
  • lines changed 55, context: html, text, full: html, text
    add modification based on Katrina's suggestions
  • lines changed 1, context: html, text, full: html, text
    add . in the end of release notes
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra
  • lines changed 0, context: html, text, full: html, text
    changing WholeBrain to Whole Brain in subGroup2 cellType, test to see whether this changes the label in the matrix box on the top of the track setting page
  • lines changed 0, context: html, text, full: html, text
    change Whole Brain back to WholeBrain in subgroup2 cellType as it generated err when doing make
  • lines changed 125, context: html, text, full: html, text
    fixed long labels according to Karina's suggestions
  • lines changed 8, context: html, text, full: html, text
    fix more long labels
  • lines changed 6, context: html, text, full: html, text
    fix matrix labeling, remove rna extrack and localization in subtrack listing, fix shortLabel according to Katrina's suggestions, I also removed RNAextract in the file download list
  • lines changed 1, context: html, text, full: html, text
    capitalize the first letter in immortal cells
  • lines changed 6, context: html, text, full: html, text
    clean up labels
  • lines changed 1, context: html, text, full: html, text
    testing viewLimits setting. see Katrina's question 12 in note #55 in tickiet #6476
  • lines changed 2, context: html, text, full: html, text
    change 0.0 to 3.0 in line starts with type bigWig in BAT rep1 stanza, this is a test to address Katrina's point 12, note #55 in in tickiet #6476
  • lines changed 1, context: html, text, full: html, text
    change 3.0 back to the original value of 0.0 in line starts with type bigWig
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release2.html
  • lines changed 72, context: html, text, full: html, text
    add references for new histone modifications submitted, the description for histone and tfbs are the same as they are related experiments and thus the references
  • lines changed 1, context: html, text, full: html, text
    update release note