Commits for markd

v265_preview to v265_preview2 (2012-03-13 to 2012-03-20) v265

• enabled orfeome for mouse and human. Removed outdated orfeome code
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/orfeome/README - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/orfeome/makefile - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/orfeome/orfeomeDbLoad.c - lines changed 274, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/orfeome/orfeomeImageIds.as - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/orfeome/orfeomeImageIds.c - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/orfeome/orfeomeImageIds.h - lines changed 64, context: html, text, full: html, text
• removed outdated MGC stuff
  • src/hg/makeDb/genbank/etc/build-mgc - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/build.crontab - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/rr-cntl - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/rr-dbload - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/rr.crontab - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/README - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/makefile - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcClone.as - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcClone.c - lines changed 148, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcClone.h - lines changed 62, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcDbLoad.c - lines changed 378, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcDownloadStep - lines changed 199, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcFullength.as - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcFullength.c - lines changed 267, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcFullength.h - lines changed 81, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcImport.c - lines changed 265, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcLibrary.as - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcLibrary.c - lines changed 313, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcLibrary.h - lines changed 98, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcStage1.as - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcStage1.c - lines changed 172, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/mgc/mgcStage1.h - lines changed 66, context: html, text, full: html, text
• removed outdated invirtogen warning
  • src/hg/makeDb/genbank/doc/to-do.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/dbload/gbBuildState.c - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/dbload/gbMDParse.c - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/dbload/gbMetaData.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/process/gbProcess.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/process/keyFields.doc - lines changed 1, context: html, text, full: html, text
• include /cluster/bin in genbank path
  • src/hg/makeDb/genbank/src/lib/gbCommon.pm - lines changed 3, context: html, text, full: html, text