Commits for vsmalladi
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v265_preview to v265_preview2 (2012-03-13 to 2012-03-20) v265
- Fixed incorrect switching of Age and vendor id for ES-E14 cells. Redmine #7199.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
- Removed duplicate BMDM cell line.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 17, context: html, text, full: html, text
- Fixes for Redmine #7200
1. Updated term, tag and validation file name to not include Millipore. ATF1_(06-325)
2. Updated term, tag and validation file name to use vendor Id. ATF2_(9221)
3. Update term, tag and validation file name to add dash in vendor id. CBP_(sc-369)
4. Update term, tag and validation file name to add dash in vendor id. COREST_(sc-30189)
7. Updated term, tag and validation file name to use vendor Id. CREB1_(9198)
8. Updated term, tag and validation file name to use vendor Id. CycT1_(sc-10750)
10. Updated term, tag and validation file name to use vendor Id. HMGN1_(ab51212)
11. Update term, tag and validation file name to add dash in vendor id. hSpt5_(sc-28678)
12. Updated term, tag and validation file name to use vendor Id. Med1_(sc-8998)
13. Update term, tag and validation file name to add dash in vendor id. Med26_(sc-48776)
14. Update term, tag and validation file name to add dash in vendor id. TBP_(sc-273)
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 34, context: html, text, full: html, text
- Fixed spacing in SIN3A NB6001263.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- Added 3 experiments. Redmine #5397.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 439, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.ra - lines changed 55, context: html, text, full: html, text
- Added 27 submissions. Redmine #4486.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 3457, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra - lines changed 491, context: html, text, full: html, text
- Fixed links found by weekly link checker.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 4, context: html, text, full: html, text
- Added tag about validation documents that was missing, found using link checker.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Added 10 of the 19 datasets expected. Redmine #6626.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeFsuRepliSeq.ra - lines changed 386, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliSeq.html - lines changed 149, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliSeq.ra - lines changed 103, context: html, text, full: html, text
- Recovered changes lost in merge conflict. Commit recovered: faf9349f5a321c17fef08a65f5170b773e2fb702.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 33, context: html, text, full: html, text
- Replaced Peaks files, to fix error that qa found. Redmine #111.
- src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuHistone.release1.notes - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 226, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 27, context: html, text, full: html, text
- Commented out duplicate term. Found when reviewing cv. Redmine #7283.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 18, context: html, text, full: html, text
- Changes from cv code review. Redmine #7283
1. Term CREB1_(06-863) has antibody validation name that is inconsistent with naming schema. Changed name.
2. Term NFKB. Updated validation name to use vendor Id and be consistent.
3. Removed term nuclearMatrix GO:0016363 duplicate to term nuclearMatrix
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 1199, context: html, text, full: html, text
- Updated labels to be capatalized.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Updating Style Guide and README to kent/src standards. Redmine #7162.
- Removed dateUnrestricted for 4 cells: BJ, K562, BG02ES, GM06990 since they have already been published on. Following embargo policy. Redmine #7325.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwRepliSeq.ra - lines changed 111, context: html, text, full: html, text
- Fixes found by Pre-QA Redmine #111
1. Alphabatized Erythoblast in matrix
4. Changed "Because the signal ..." -> "Since, the signal ..."
5. Fixed Data release policy
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 101, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 1, context: html, text, full: html, text
- Add 10T1/2 cell registration.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 18, context: html, text, full: html, text
- Changed default version number of Beautiful soup.
- Fixed link for order url found in weekly link checker.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- 6. Added comma's after et .al. Redmine #111.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html - lines changed 6, context: html, text, full: html, text
- Fixed an error in label for Genotype that was removed from a failed merge conflict of commit id: faf9349f5a321c17fef08a65f5170b773e2fb702. Redmine #5149.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
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