File Changes for braney

v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266

• src/hg/inc/genePred.h
  • lines changed 2, context: html, text, full: html, text
    more work to advance #6152. Now with documentation of synonymous changes, the actual changes in (non)synonumous changes, and a fix to gnawing problem of the exonstarts in the genePred disappearing
• src/hg/inc/gpFx.h
  • lines changed 1, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
• src/hg/inc/soterm.h
  • lines changed 12, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
  • lines changed 1, context: html, text, full: html, text
    some clean up for #6152
• src/hg/inc/variant.h
  • lines changed 1, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
• src/hg/lib/annoGratorGpVar.c
  • lines changed 61, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
  • lines changed 10, context: html, text, full: html, text
    more work to advance #6152. Now with documentation of synonymous changes, the actual changes in (non)synonumous changes, and a fix to gnawing problem of the exonstarts in the genePred disappearing
• src/hg/lib/genePred.c
  • lines changed 2, context: html, text, full: html, text
    more work to advance #6152. Now with documentation of synonymous changes, the actual changes in (non)synonumous changes, and a fix to gnawing problem of the exonstarts in the genePred disappearing
• src/hg/lib/gpFx.c
  • lines changed 165, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
  • lines changed 19, context: html, text, full: html, text
    ongoing work #6152. non-synonymous change in gene on the negative strand
  • lines changed 51, context: html, text, full: html, text
    more work to advance #6152. Now with documentation of synonymous changes, the actual changes in (non)synonumous changes, and a fix to gnawing problem of the exonstarts in the genePred disappearing
  • lines changed 158, context: html, text, full: html, text
    some clean up for #6152
• src/hg/lib/tests/annoGratorTester.c
  • lines changed 10, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
  • lines changed 9, context: html, text, full: html, text
    ongoing work #6152. non-synonymous change in gene on the negative strand
  • lines changed 1, context: html, text, full: html, text
    more work to advance #6152. Now with documentation of synonymous changes, the actual changes in (non)synonumous changes, and a fix to gnawing problem of the exonstarts in the genePred disappearing
• src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToGpFx.txt
  • lines changed 15, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)
  • lines changed 7, context: html, text, full: html, text
    ongoing work #6152. non-synonymous change in gene on the negative strand
  • lines changed 17, context: html, text, full: html, text
    more work to advance #6152. Now with documentation of synonymous changes, the actual changes in (non)synonumous changes, and a fix to gnawing problem of the exonstarts in the genePred disappearing
• src/hg/lib/variant.c
  • lines changed 1, context: html, text, full: html, text
    ongoing work on #6152. Now with non-synonymous changes! (well, at least with respect to the genomic DNA)