File Changes for cricket

v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266

• src/hg/encode/validateFiles/validateFilesUsage
  • lines changed 27, context: html, text, full: html, text
    Cleaning out duplicate lines
• src/hg/lib/encode/bedLogR.as
  • lines changed 1, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/bedLogR.sql
  • lines changed 5, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/bedRnaJunctions.as
  • lines changed 2, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/bedRrbs.as
  • lines changed 1, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/bedRrbs.sql
  • lines changed 8, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/broadPeak.sql
  • lines changed 5, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/encodeBuPromCerebrum.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromColon.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromHeart.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromKidney.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromLiver.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromLung.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromSkMuscle.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromSpleen.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromStomach.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeBuPromTestis.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/encodeErge5race.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeBinding.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeDNAseI.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeExpProm.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeInVitroFoot.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeMethProm.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeStableTransf.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeSummary.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodeErgeTransTransf.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/encodePrimateAlleles.c
  • lines changed 303, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/gappedPeak.as
  • lines changed 1, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/gappedPeak.sql
  • lines changed 6, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/narrowPeak.sql
  • lines changed 1, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/obsolete/shortFrags.as
  • lines changed 31, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/obsolete/shortFrags.sql
  • lines changed 37, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/tagAlign.as
  • lines changed 1, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/tagAlign.sql
  • lines changed 2, context: html, text, full: html, text
    Trying to bring the as files and sql files in line wiht each other, specifically score is uint and reserved is uint and strand is char[1]
• src/hg/lib/encode/unused/encodeBuPromCerebrum.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromColon.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromHeart.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromKidney.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromLiver.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromLung.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromSkMuscle.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromSpleen.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromStomach.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeBuPromTestis.sql
  • lines changed 24, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/encodeErge5race.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeBinding.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeDNAseI.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeExpProm.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeInVitroFoot.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeMethProm.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeStableTransf.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeSummary.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodeErgeTransTransf.c
  • lines changed 204, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/encodePrimateAlleles.c
  • lines changed 303, context: html, text, full: html, text
    Non of these .c files are made. We suspect they were generated by autosql and commited without thought
• src/hg/lib/encode/unused/shortFrags.as
  • lines changed 31, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/lib/encode/unused/shortFrags.sql
  • lines changed 37, context: html, text, full: html, text
    Moving more things into unsed because they were in obsolete or because they are a .sql file with no .as and no .c
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 2, context: html, text, full: html, text
    Removing the _ in a label where it is supposed to be a space
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 5, context: html, text, full: html, text
    Adding missing accession numbers
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 370, context: html, text, full: html, text
    Trying to get the metaCheck to resolve and deal with old revoke policy weirdness
  • lines changed 1247, context: html, text, full: html, text
    Trying to clean up this track for release, see notes in ticket 6579, working on short labels, long labels, dealing with the DCC Rep issue, removing origAssembly and labProtocolId as redundant information, removing the duplicate trackDb entries
  • lines changed 731, context: html, text, full: html, text
    Riken changes to merge with Matts
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Getting rid of extraFields
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra
  • lines changed 7, context: html, text, full: html, text
    Changing the - to underbar or space
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html
  • lines changed 11, context: html, text, full: html, text
    Starting the release notes and the changes to the displayed views
  • lines changed 1, context: html, text, full: html, text
    Adding the cell lines to the release notes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 1, context: html, text, full: html, text
    Taking Riken out of the RNA-seq super track per Kate request
  • lines changed 2581, context: html, text, full: html, text
    Trying to clean up this track for release, see notes in ticket 6579, working on short labels, long labels, dealing with the DCC Rep issue, removing origAssembly and labProtocolId as redundant information, removing the duplicate trackDb entries
  • lines changed 424, context: html, text, full: html, text
    Riken changes to merge with Matts
  • lines changed 8, context: html, text, full: html, text
    Changing rank and label for a few to line them up with the meta data
  • lines changed 248, context: html, text, full: html, text
    trying to show the Generation 0 information in the label, also ditched the errang hg19 line and changed bedRnaElements to bed 6 which I Thought was already done
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    Removing extraFields