Commits for galt
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v266_preview2 to v266_base (2012-04-17 to 2012-04-24) v266
- remove -lm dependency on linefile; also enables others to use callback methods to support other types
- src/lib/lineFileOnBigBed.c - lines changed 110, context: html, text, full: html, text
- a little cleanup is nice
- src/lib/lineFileOnBigBed.c - lines changed 1, context: html, text, full: html, text
- fixing problem between htmlEncoding and wanting to preserve newlines in comments
- src/utils/git-reports/git-reports.c - lines changed 2, context: html, text, full: html, text
- no nags
- src/hg/encode/validateFiles/input/bed12.as - lines changed 17, context: html, text, full: html, text
- src/hg/encode/validateFiles/input/bed12.as.note - lines changed 2, context: html, text, full: html, text
- fixing bug in BAM validator, needed if (errs > ), added the old Error Count 0 back to the end of succesful runs, at least for nonBED, fixed make test to actually do something
- src/hg/encode/validateFiles/expected/tagAlign1.out - lines changed 1, context: html, text, full: html, text
- src/hg/encode/validateFiles/expected/tagAlign2.out - lines changed 1, context: html, text, full: html, text
- src/hg/encode/validateFiles/makefile - lines changed 12, context: html, text, full: html, text
- src/hg/encode/validateFiles/validateFiles.c - lines changed 2, context: html, text, full: html, text
- fixing header
- src/utils/asCompare/asCompare.c - lines changed 1, context: html, text, full: html, text
- improving the help msg for vf b2bb hglb
- src/hg/encode/validateFiles/validateFiles.c - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/hgLoadBed/hgLoadBed.c - lines changed 7, context: html, text, full: html, text
- src/utils/bedToBigBed/bedToBigBed.c - lines changed 6, context: html, text, full: html, text
- fixed long lines per jims review; also removed odd condition on start/end coords
- src/hg/encode/validateFiles/validateFiles.c - lines changed 53, context: html, text, full: html, text
- fix comment location
- src/hg/encode/validateFiles/validateFiles.c - lines changed 2, context: html, text, full: html, text
- simple optimization suggested by jim
- src/hg/lib/customFactory.c - lines changed 2, context: html, text, full: html, text
- keeping .as score as uint for many reasons. stuck with int for bed struct still in support of old CTs
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