30fe9189ba512ef9b91c51e5b1a689666d19d3b3 vsmalladi Thu Apr 19 11:00:07 2012 -0700 Fixed hash bang. diff --git python/programs/cvValidate/cvValidate python/programs/cvValidate/cvValidate index 3e9718d..d47713b 100755 --- python/programs/cvValidate/cvValidate +++ python/programs/cvValidate/cvValidate @@ -1,34 +1,34 @@ -#!/hive/groups/encode/dcc/bin/python +#!/usr/bin/env python2.7 import sys import argparse from ucscgenomics import cv class validate(object): '''validation script that calls cv.validate and then puts all its errors into a list''' def __init__(self): parser = argparse.ArgumentParser(description = 'Validates the controlled vocabulary file') parser.add_argument('-c', '--cvPath', help='Overrides the default cv path ~/kent/src/hg/makeDb/trackDb/cv/alpha/cv.ra') parser.add_argument('-p', '--protocolPath', help='Overrides the default protocol path ~/htdocsExtras/ENCODE/') parser.add_argument('-l', '--loose', action='store_true', default=False, help='Suppress all warnings, only display breaking errors') args = parser.parse_args(sys.argv[1:]) self.loose = args.loose self.errors = list() self.cv = cv.CvFile(args.cvPath, self.addtoerrs, args.protocolPath) self.cv.validate() for err in self.errors: print err def addtoerrs(self, exception): if not self.loose or exception.strict: self.errors.append(exception) if __name__ == '__main__': val = validate()