Commits for hiram
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v265_base to v266_preview (2012-03-27 to 2012-04-10) v266
- adding manatee triMan1
- src/hg/utils/phyloTrees/61way.nh - lines changed 25, context: html, text, full: html, text
- download sequence for new browsers
- src/hg/makeDb/doc/melUnd1.txt - lines changed 68, context: html, text, full: html, text
- src/hg/makeDb/doc/triMan1.txt - lines changed 67, context: html, text, full: html, text
- initial browser build
- src/hg/makeDb/doc/melUnd1.txt - lines changed 102, context: html, text, full: html, text
- src/hg/makeDb/doc/triMan1.txt - lines changed 129, context: html, text, full: html, text
- masking underway
- src/hg/makeDb/doc/chrPic1.txt - lines changed 349, context: html, text, full: html, text
- src/hg/makeDb/doc/melUnd1.txt - lines changed 161, context: html, text, full: html, text
- src/hg/makeDb/doc/triMan1.txt - lines changed 162, context: html, text, full: html, text
- rn5 lastz done with abridged repeats
- src/hg/makeDb/doc/mm10.txt - lines changed 11, context: html, text, full: html, text
- completed masking operations, used the RM result
- src/hg/makeDb/doc/triMan1.txt - lines changed 53, context: html, text, full: html, text
- done with masking, used the WM result
- src/hg/makeDb/doc/melUnd1.txt - lines changed 99, context: html, text, full: html, text
- original source from makeGenomeDb.pl
- src/hg/makeDb/trackDb/manatee/triMan1/description.html - lines changed 132, context: html, text, full: html, text
- src/hg/makeDb/trackDb/manatee/triMan1/gap.html - lines changed 64, context: html, text, full: html, text
- src/hg/makeDb/trackDb/manatee/triMan1/gold.html - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/manatee/triMan1/trackDb.ra - lines changed 8, context: html, text, full: html, text
- original source from makeGenomeDb.pl
- src/hg/makeDb/trackDb/birds/melUnd1/description.html - lines changed 132, context: html, text, full: html, text
- src/hg/makeDb/trackDb/birds/melUnd1/gap.html - lines changed 64, context: html, text, full: html, text
- src/hg/makeDb/trackDb/birds/melUnd1/gold.html - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/birds/melUnd1/trackDb.ra - lines changed 8, context: html, text, full: html, text
- original source from makeGenomeDb.pl
- src/hg/makeDb/trackDb/turtle/chrPic1/description.html - lines changed 132, context: html, text, full: html, text
- src/hg/makeDb/trackDb/turtle/chrPic1/gap.html - lines changed 64, context: html, text, full: html, text
- src/hg/makeDb/trackDb/turtle/chrPic1/gold.html - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/turtle/chrPic1/trackDb.ra - lines changed 8, context: html, text, full: html, text
- adding manatee, painted turtle, budgerigar
- src/hg/makeDb/trackDb/makefile - lines changed 3, context: html, text, full: html, text
- done with masking, used the WM result
- src/hg/makeDb/doc/chrPic1.txt - lines changed 86, context: html, text, full: html, text
- adding melUnd1 budgie
- src/hg/utils/phyloTrees/62way.nh - lines changed 25, context: html, text, full: html, text
- running reciprocal bests and starting triMan1 monDom5 sarHar1 melUnd1 lastz runs
- src/hg/makeDb/doc/mm10.txt - lines changed 359, context: html, text, full: html, text
- adding Trichechus manatus latirostris (Florida manatee) triMan1
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 3, context: html, text, full: html, text
- adding Trichechus manatus latirostris (Florida manatee) triMan1
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
- starting genbank
- src/hg/makeDb/doc/triMan1.txt - lines changed 95, context: html, text, full: html, text
- done with lastz chain net runs for ornAna1 chrPic1 triMan1 monDom5 sarHar1 melUnd1 and most recip bests
- src/hg/makeDb/doc/mm10.txt - lines changed 173, context: html, text, full: html, text
- starting lastz runs for the final set: galGal4 taeGut1 anoCar2 melGal1 xenTro3 latCha1 gadMor1 oreNil1 gasAcu1 fr3 tetNig2 danRer7 oryLat2 petMar1
- src/hg/makeDb/doc/mm10.txt - lines changed 882, context: html, text, full: html, text
- issue.sql has added two new fields
- src/hg/utils/automation/grcIncidentDb.pl - lines changed 3, context: html, text, full: html, text
- src/hg/utils/automation/ncbiIncidentDb.pl - lines changed 3, context: html, text, full: html, text
- done with all 60 lastz chain net alignments with swaps
- src/hg/makeDb/doc/mm10.txt - lines changed 146, context: html, text, full: html, text
- Added triMan1 - Manatee
- src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
- completed genbank run
- src/hg/makeDb/doc/triMan1.txt - lines changed 8, context: html, text, full: html, text
- initial contents
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra - lines changed 354, context: html, text, full: html, text
- initial contents
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.gliersChainNet.ra - lines changed 66, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra - lines changed 338, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.previousVersionsChainNet.ra - lines changed 226, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.primatesChainNet.ra - lines changed 226, context: html, text, full: html, text
- glier subset
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.gliersChainNet.ra - lines changed 106, context: html, text, full: html, text
- moved older genome release chain nets to this package
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.previousVersionsChainNet.ra - lines changed 185, context: html, text, full: html, text
- five primary groups for chain net definitions
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 5, context: html, text, full: html, text
- setting priority to get in line
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra - lines changed 1, context: html, text, full: html, text
- using otoGar3 instead of otoGar1
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.primatesChainNet.ra - lines changed 5, context: html, text, full: html, text
- correct netOtoGar3 instead of netOtoGar1
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.primatesChainNet.ra - lines changed 1, context: html, text, full: html, text
- updated with newer listings from NCBI taxonomy
- src/hg/utils/phyloTrees/primates.txt - lines changed 23, context: html, text, full: html, text
- contents split up into separate files
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.chainNet.ra - lines changed 483, context: html, text, full: html, text
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