cabb4fa228289aadbaf6a1a16461646fcb7aa774
braney
  Tue Apr 10 18:55:38 2012 -0700
interim check-in for #6152.   Adding variant structure and setup that allows maintaing multiple variants in one gp.
diff --git src/hg/lib/makefile src/hg/lib/makefile
index e5be70e..c0c7add 100644
--- src/hg/lib/makefile
+++ src/hg/lib/makefile
@@ -85,31 +85,31 @@
     sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o \
     snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o \
     snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o \
     spDb.o splignAlign.o stanMad.o stsAlias.o \
     stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o \
     stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o suggest.o \
     switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o \
     sqlProg.o tfbsCons.o tfbsConsSites.o \
     tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o \
     taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o \
     tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o \
     trackDbCustom.o trackHub.o trackLayout.o trackTable.o trackVersion.o trashDir.o \
     transRegCode.o transRegCodeCondition.o \
     transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o \
     txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o ucscRetroInfo.o ucscRetroOrtho.o \
-    validateGisaid.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o \
+    validateGisaid.o variant.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o \
     wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o \
     wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o yaleGencodeAssoc.o \
     zdobnovSynt.o oreganno.o \
     oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o \
     alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o geneTree.o \
     megablastInfo.o pgPhenoAssoc.o pgSiftPred.o pgPolyphenPred.o variome.o
 
 ifeq (${GBROWSE}, 1)
   GBROWSE_D=-DGBROWSE
 else
   GBROWSE_D=
 endif
 
 %.o: %.c
 	${CC} ${COPT} ${CFLAGS} ${GBROWSE_D} ${LOWELAB_DEFS} ${HG_DEFS} ${HG_WARN} ${HG_INC} ${XINC} -o $@ -c $<