587e5764be32b0ea896749e416658b5f7e73590c mmaddren Thu May 10 16:31:35 2012 -0700 added more release object support to tracks, and fixed cvValidate for new libs diff --git python/programs/cvValidate/cvValidate python/programs/cvValidate/cvValidate index d47713b..1d8397e 100755 --- python/programs/cvValidate/cvValidate +++ python/programs/cvValidate/cvValidate @@ -1,34 +1,34 @@ #!/usr/bin/env python2.7 import sys import argparse -from ucscgenomics import cv +from ucscGb.encode import cv class validate(object): '''validation script that calls cv.validate and then puts all its errors into a list''' def __init__(self): parser = argparse.ArgumentParser(description = 'Validates the controlled vocabulary file') parser.add_argument('-c', '--cvPath', help='Overrides the default cv path ~/kent/src/hg/makeDb/trackDb/cv/alpha/cv.ra') parser.add_argument('-p', '--protocolPath', help='Overrides the default protocol path ~/htdocsExtras/ENCODE/') parser.add_argument('-l', '--loose', action='store_true', default=False, help='Suppress all warnings, only display breaking errors') args = parser.parse_args(sys.argv[1:]) self.loose = args.loose self.errors = list() self.cv = cv.CvFile(args.cvPath, self.addtoerrs, args.protocolPath) self.cv.validate() for err in self.errors: print err def addtoerrs(self, exception): if not self.loose or exception.strict: self.errors.append(exception) if __name__ == '__main__': val = validate()