2f19b4081ef0f0d93daf8f7ff1c26cf8879a4d14
braney
  Thu Apr 26 17:26:10 2012 -0700
more work on #6152.   Now with in-frame deletions!
diff --git src/hg/inc/soterm.h src/hg/inc/soterm.h
index c436a37..e5baaa3 100644
--- src/hg/inc/soterm.h
+++ src/hg/inc/soterm.h
@@ -29,31 +29,31 @@
     downstream_gene_variant=1632,
     inframe_deletion=1651,
     inframe_insertion=1652,
     TF_binding_site_variant=1782,
     non_coding_exon_variant=1792,
     non_synonymous_variant=1818,
     synonymous_variant=1819,
     } soTerm;
 
 struct soCall  // a single variant effect call
     {
     struct soCall *next;
     uint    soNumber;           // Sequence Ontology Number
     union
 	{
-	struct codingChange     // (non)synonymous variant
+	struct codingChange     // (non)synonymous variant, deletions in CDS
 	    {
 	    char *transcript;
 	    uint exonNumber;
 
 	    // the next three should have a length specified too
 	    uint cDnaPosition;
 	    uint cdsPosition;
 	    uint pepPosition;
 	    char *aaChanges;
 	    char *codonChanges;
 	    } codingChange;
 	struct     // intron_variant
 	    {
 	    char *transcript;
 	    uint intronNumber;