5de6bad36ec355f9cc511c5a058afe122dc82aab
mmaddren
  Tue Apr 24 14:02:38 2012 -0700
added small fix for cv.py
diff --git python/lib/ucscgenomics/cv.py python/lib/ucscgenomics/cv.py
index 8db721f..014a733 100644
--- python/lib/ucscgenomics/cv.py
+++ python/lib/ucscgenomics/cv.py
@@ -62,31 +62,31 @@
         entry = CvStanza()
 
         key, val = entry.readStanza(stanza)
         return key, val, entry
 
 
     def validate(self):
         '''base validation method which calls all stanzas' validate'''
         for stanza in self.itervalues():
             stanza.validate(self)
         #print self.missingTypes
 
     def getTypeOfTermStanza(self, type):
     
         if type == 'mouseCellType':
-            mousestanza = cv.CvStanza()
+            mousestanza = CvStanza()
             mousestanza['term'] = 'mouseCellType'
             mousestanza['tag'] = 'MOUSECELLTYPE'
             mousestanza['type'] = 'typeOfTerm'
             mousestanza['label'] = 'Cell, tissue or DNA sample specific to mouse'
             mousestanza['description'] = 'NOT FOR USE! ONLY FOR VALIDATION. Cell line or tissue used as the source of experimental material specific to mouse.'
             mousestanza['searchable'] = 'multiSelect'
             mousestanza['cvDefined'] = 'yes'
             mousestanza['validate'] = 'cv or None'
             mousestanza['requiredVars'] = 'term,tag,type,description,organism,vendorName,orderUrl,age,strain,sex #Provisional'
             mousestanza['optionalVars'] = 'label,tissue,termId,termUrl,color,protocol,category,vendorId,lots,deprecated #Provisional'
             return mousestanza
     
         types = self.filter(lambda s: s['term'] == type and s['type'] == 'typeOfTerm', lambda s: s)
         if len(types) != 1:
             return None