File Changes for steve

v266_base to v267_preview (2012-04-24 to 2012-05-01) v267

• src/hg/htdocs/ENCODE/analysisTools.html
  • lines changed 64, context: html, text, full: html, text
    Put tools into categories and alphabetized per Kate's request (redmine #7701)
  • lines changed 5, context: html, text, full: html, text
    Made changes suggested by Katrina in code review (redmine #7738)
• src/hg/htdocs/ENCODE/downloadsMouse.html
  • lines changed 4, context: html, text, full: html, text
    Added line for PSU Histone (redmine #111)
• src/hg/htdocs/ENCODE/encodeTools.html
  • lines changed 178, context: html, text, full: html, text
    Put tools into categories and alphabetized per Kate's request (redmine #7701)
  • lines changed 1, context: html, text, full: html, text
    Corrected spelling of RSEQtools (redmine #7701)
  • lines changed 13, context: html, text, full: html, text
    Made changes suggested by Katrina in code review (redmine #7738 note 8)
  • lines changed 34, context: html, text, full: html, text
    Made changes suggested by Katrina in code review (redmine #7738)
• src/hg/htdocs/ENCODE/softwareTools.html
  • lines changed 2, context: html, text, full: html, text
    Put tools into categories and alphabetized per Kate's request (redmine #7701)
• src/hg/htdocs/inc/encodeProjectSoftware.topbar.html
  • lines changed 38, context: html, text, full: html, text
    Added new menu bar file that includes a link to Software Tools (redmine #7701)
  • lines changed 1, context: html, text, full: html, text
    Added a dash between 'Data Standards' and 'Software Tools' (redmine #7701)
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
  • lines changed 0, context: html, text, full: html, text
    Made change suggested by Katrina in code review (redmine #7738 note 4)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeRikenCage.ra
  • lines changed 10195, context: html, text, full: html, text
    Staging RIKEN CAGE Loc (Release 3) on beta (redmine #6579)
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Staging RIKEN CAGE Loc (Release 3) on beta (redmine #6579)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html
  • lines changed 38, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
  • lines changed 9, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
  • lines changed 9, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.html
  • lines changed 9, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
  • lines changed 27, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
  • lines changed 27, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
  • lines changed 19, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
  • lines changed 82, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html
  • lines changed 82, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/mouse/ikmc.html
  • lines changed 1, context: html, text, full: html, text
    Fixed broken link
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging Caltech RNA-Seq (Release 1) on beta (redmine #4156)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeCaltechRnaSeq.ra
  • lines changed 577, context: html, text, full: html, text
    Staging Caltech RNA-Seq (Release 1) on beta (redmine #4156)
  • lines changed 1, context: html, text, full: html, text
    Ruihua added freeze date to one entry (redmine #4156)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodePsuHistone.ra
  • lines changed 3, context: html, text, full: html, text
    Venkat fixed peak file (redmine #6703)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    Releasing PSU Histone (Release 1) to RR (redmine #111)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodePsuHistone.ra
  • lines changed 8044, context: html, text, full: html, text
    Releasing PSU Histone (Release 1) to RR (redmine #111)
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Staging Caltech RNA-Seq (Release 1) on beta (redmine #4156)
  • lines changed 1, context: html, text, full: html, text
    Releasing PSU Histone (Release 1) to RR (redmine #111)
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html
  • lines changed 9, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.html
  • lines changed 36, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html
  • lines changed 9, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.html
  • lines changed 15, context: html, text, full: html, text
    Added new 'Publications' section with specified citations (redmine #7514)
• src/hg/makeDb/trackDb/transMap.html
  • lines changed 3, context: html, text, full: html, text
    Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
• src/hg/makeDb/trackDb/transMapAlnMRna.html
  • lines changed 3, context: html, text, full: html, text
    Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
• src/hg/makeDb/trackDb/transMapAlnRefSeq.html
  • lines changed 3, context: html, text, full: html, text
    Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
• src/hg/makeDb/trackDb/transMapAlnSplicedEst.html
  • lines changed 3, context: html, text, full: html, text
    Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
• src/hg/makeDb/trackDb/transMapAlnUcscGenes.html
  • lines changed 3, context: html, text, full: html, text
    Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)