Commits for vsmalladi

v266_base to v267_preview (2012-04-24 to 2012-05-01) v267

• Fixed matrix labels. Redmine #4486.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra - lines changed 34, context: html, text, full: html, text
• Added md5sum's for files. Redmine #4486.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 8, context: html, text, full: html, text
• Added guidlines for length's of modules, functions and methods. Redmine #7162.
  • python/style.txt - lines changed 6, context: html, text, full: html, text
• Fixed metaDb to remove old file names.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 305, context: html, text, full: html, text
• Fixed DAF to use Plus and Minus Raw Signal. Redmine #829.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhRnaSeq.daf - lines changed 7, context: html, text, full: html, text
• Added stanza for Harvard control. Redmine #4486.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Fixed Peak file. Redmine #6703.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 1, context: html, text, full: html, text
• Fixed TGF-b to TGF-beta.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Removed ms-dos CRLF characters.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.html - lines changed 3, context: html, text, full: html, text
• Fixed naming of Provisional tags.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Approved changes in beta/cv.ra. Redmine #7723.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 129, context: html, text, full: html, text
• Updated publications sections. Redmine #4486.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html - lines changed 23, context: html, text, full: html, text
• Fixed spelling of Provisional.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added protocols for CSHL lab.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 32, context: html, text, full: html, text
• Moved Junctions from downloadOnly to displayed. Redmine #7089.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release2.ra - lines changed 162, context: html, text, full: html, text
• Added protocol documents view and removed downloadOnly for Junctions. Redmine #7089.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf - lines changed 6, context: html, text, full: html, text
• Updated names for objects to use Harvard Control. Also added Harvard Control to track. Redmine #4486.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 276, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra - lines changed 58, context: html, text, full: html, text