File Changes for wong

v266_base to v267_preview (2012-04-24 to 2012-05-01) v267

• python/lib/ucscgenomics/qa/encode/tableCheck.py
  • lines changed 1, context: html, text, full: html, text
    adding a reference
• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • lines changed 10, context: html, text, full: html, text
    restructiring for new validateFiles and .as and .sql locations
• src/hg/encode/encodeLoad/installSqlSchemas.pl
  • lines changed 52, context: html, text, full: html, text
    reworked installSchemas to actually work and modified make to compensate
• src/hg/encode/encodeLoad/makefile
  • lines changed 1, context: html, text, full: html, text
    reworked installSchemas to actually work and modified make to compensate
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 308, context: html, text, full: html, text
    restructuring for the enw validateFiles
  • lines changed 3, context: html, text, full: html, text
    filtering on bam only for validation settings
  • lines changed 9, context: html, text, full: html, text
    removed some debugging prints
  • lines changed 1, context: html, text, full: html, text
    forgot to pull variable out
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 6, context: html, text, full: html, text
    restored the object type after some discoveries were made about how the files were uploaded
  • lines changed 17, context: html, text, full: html, text
    revoking old TssHmm's
  • lines changed 313, context: html, text, full: html, text
    added in seqPlayform where known
  • lines changed 3, context: html, text, full: html, text
    resolving merge
  • lines changed 45, context: html, text, full: html, text
    missed this metaDAta somehow
  • lines changed 13, context: html, text, full: html, text
    fixing metadata errors
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 2, context: html, text, full: html, text
    adding treatment to expVars
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html
  • lines changed 5, context: html, text, full: html, text
    qa fixes for html riken
  • lines changed 2, context: html, text, full: html, text
    more html fixes for riken, this time capitalization
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 7, context: html, text, full: html, text
    resolving merge
  • lines changed 1, context: html, text, full: html, text
    reverting an error made earlier
  • lines changed 115, context: html, text, full: html, text
    trackDb fixes and promotes tier 2.5 cell lines
  • lines changed 1, context: html, text, full: html, text
    removing a bad search and replace change
  • lines changed 0, context: html, text, full: html, text
    removing space that was causing default to not be checked
  • lines changed 1, context: html, text, full: html, text
    removing another bad search and replace
  • lines changed 67, context: html, text, full: html, text
    qa fixes
  • lines changed 8, context: html, text, full: html, text
    more qa fixes
  • lines changed 16, context: html, text, full: html, text
    changed alignments to off, and removed replicate from fileSortOrder
  • lines changed 1, context: html, text, full: html, text
    changed max window on minus to be the same as plus
• src/hg/utils/automation/Encode.pm
  • lines changed 1, context: html, text, full: html, text
    removed deprecated types from extended types list
  • lines changed 1, context: html, text, full: html, text
    shouldnt have removed gappedPeak
    
  • lines changed 5, context: html, text, full: html, text
    Merge branch 'master' into newValidateFiles