File Changes for angie

v267_preview to v267_preview2 (2012-05-01 to 2012-05-08) v267

• src/hg/hgVarAnnogrator/hgVarAnnogrator.c
  • lines changed 301, context: html, text, full: html, text
    hgVarAnnogrator now stores querySpec in the cart, and uses the cart'squerySpec (if exists) to draw the page. It also does a reload when the
    user hits the back button, because the web browser forgets all AJAX
    updates and the cart has the latest state. It does synchronous AJAX
    to lookup the position before executing a query; that causes failure
    of ajax.js's setCartVars async GET, so in order to avoid a warning
    about network error, we ignore errors for setCartVars. (#6152)
    
  • lines changed 2, context: html, text, full: html, text
    Use lastPosition cart variable (when present) when a position lookup fails. (#6152)
• src/hg/js/ajax.js
  • lines changed 5, context: html, text, full: html, text
    hgVarAnnogrator now stores querySpec in the cart, and uses the cart'squerySpec (if exists) to draw the page. It also does a reload when the
    user hits the back button, because the web browser forgets all AJAX
    updates and the cart has the latest state. It does synchronous AJAX
    to lookup the position before executing a query; that causes failure
    of ajax.js's setCartVars async GET, so in order to avoid a warning
    about network error, we ignore errors for setCartVars. (#6152)
    
  • lines changed 4, context: html, text, full: html, text
    Make setCartVars optionally synchronous too -- page reload was interruptingsetCartVars in some cases. (#6152)
    
• src/hg/js/hgVarAnnogrator.js
  • lines changed 35, context: html, text, full: html, text
    hgVarAnnogrator now stores querySpec in the cart, and uses the cart'squerySpec (if exists) to draw the page. It also does a reload when the
    user hits the back button, because the web browser forgets all AJAX
    updates and the cart has the latest state. It does synchronous AJAX
    to lookup the position before executing a query; that causes failure
    of ajax.js's setCartVars async GET, so in order to avoid a warning
    about network error, we ignore errors for setCartVars. (#6152)
    
  • lines changed 1, context: html, text, full: html, text
    Make setCartVars optionally synchronous too -- page reload was interruptingsetCartVars in some cases. (#6152)
    
• src/hg/lib/annoStreamDb.c
  • lines changed 41, context: html, text, full: html, text
    annoStreamDb now uses mysql server-side sorting in a couple of caseswhere table data may come out unsorted: 1) When a table e.g. knownGene
    has an index on txEnd, sometimes the mysql query optimizer uses that
    index and then rows come out not sorted by txStart.
    2) GenBank tables get ongoing updates, so although they are mostly
    sorted from initial load, they are not 100% sorted. (#6152)
    
  • lines changed 12, context: html, text, full: html, text
    Turns out that snp135 yields unsorted output for 'where chrom="...' --for now, just sort all queries that have a where clause. (#6152)