Commits for katrina

v267_preview to v267_preview2 (2012-05-01 to 2012-05-08) v267

• staging updated metadata; venkat added readType and GeoSeriesAccession, redmine #6476
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeLicrRnaSeq.ra - lines changed 135, context: html, text, full: html, text
• making the ENCODE search page into the new styling; first step in #6846
  • src/hg/htdocs/ENCODE/search.html - lines changed 94, context: html, text, full: html, text
• adding missing period, redmine #6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html - lines changed 1, context: html, text, full: html, text
• added a setting to the bamColorMode tag so that the 'Aditional coloring modes' section of the Alignments configuration box would have a default selection and the alignments wouldn't just be in black as they had been, redmine 6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.ra - lines changed 1, context: html, text, full: html, text
• changing RNA-Seq to RNA-seq, redmine #6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html - lines changed 3, context: html, text, full: html, text
• removing 'All Reads' from Raw Signals and making polishing up 'Unique Reads' clarificaiton for the Signals, redmine #6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.ra - lines changed 17, context: html, text, full: html, text
• moving period to inside the html tag, redmine #6476
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrRnaSeq.release2.html - lines changed 1, context: html, text, full: html, text
• adding a setting, off, to the bamColorMode tag in the Alignments view because it was lacking one, redmine #4156
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.ra - lines changed 1, context: html, text, full: html, text
• changing instances of RNA-Seq to RNA-seq (except in journal titles where the title actually has it that way), redmine #4156
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.html - lines changed 4, context: html, text, full: html, text
• releasing LICR RNA-seq (Release 2), redmine #6476
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodeLicrRnaSeq.ra - lines changed 2340, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
• releasing mm9 Caltech RNA-seq, redmine #4156
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodeCaltechRnaSeq.ra - lines changed 578, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text