Commits for vsmalladi

v267_preview to v267_preview2 (2012-05-01 to 2012-05-08) v267

• Remvoed Strand specific signal.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhRnaSeq.daf - lines changed 7, context: html, text, full: html, text
• Added terms for Mouse FSU track. Redmine #6627.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 46, context: html, text, full: html, text
• Updated labels, experimentIds and controlIds.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 1336, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra - lines changed 76, context: html, text, full: html, text
• Added notes files for Release 2 and made release3 ra file. Redmine #4486, #7510.
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release2.notes - lines changed 4336, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra - lines changed 6922, context: html, text, full: html, text
• Added 8 submissions for the track. Redmine #3631.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 1185, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 357, context: html, text, full: html, text
• Renamed original replicate 1 to replicate 2 and laoded new replicate 1. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 132, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 42, context: html, text, full: html, text
• Fixed lab designations for mouse to be Stanford-m or Yale-m.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhHist.daf - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhRnaSeq.daf - lines changed 3, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhTfbs.daf - lines changed 3, context: html, text, full: html, text
• Moved over approved changes to public/cv.ra from beta/cv.ra. Redmine #7800.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 132, context: html, text, full: html, text
• Fixed description for protocol.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Fixed merge conflict
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
• Removed dataVersion ENCODE Freeze.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 3, context: html, text, full: html, text
• Removed dataUnrestricted for published datasets. Redmine #7515.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 55, context: html, text, full: html, text
• Fixed the control id for dccAccession: wgEncodeEH000769. Redmine #4486.
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release2.notes - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 7, context: html, text, full: html, text
• Removed date unrestricted for PSU Experiments referenced from paper in Publications section. Redmine #7515.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 102, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 96, context: html, text, full: html, text
• Removed ; from listing of many protocols, found in html link check error.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 1, context: html, text, full: html, text
• Added some protocols for parent registrations and updated tags for protocols to have lab.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text