File Changes for steve

v268_preview2 to v268_base (2012-05-29 to 2012-06-05) v268

• src/hg/htdocs/goldenPath/help/query.html
  • lines changed 168, context: html, text, full: html, text
    Added new sample query page (redmine #7751)
• src/hg/htdocs/goldenPath/help/wiggle.html
  • lines changed 1, context: html, text, full: html, text
    Added missing bracket on </P> tag
• src/hg/makeDb/trackDb/chicken/galGal4/gap.html
  • lines changed 22, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/chicken/galGal4/gold.html
  • lines changed 26, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra
  • lines changed 6, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/cow/bosTau7/gap.html
  • lines changed 41, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/cow/bosTau7/gold.html
  • lines changed 36, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/cow/bosTau7/trackDb.chainNet.ra
  • lines changed 2, context: html, text, full: html, text
    Added appropriate override sections so mm9/mm10 would be 'named' Chain/Net tracks in appropriate assemblies (redmine #6044)
  • lines changed 6, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/cow/bosTau7/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    Added appropriate override sections so mm9/mm10 would be 'named' Chain/Net tracks in appropriate assemblies (redmine #6044)
• src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/ensGene.html
  • lines changed 34, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/ensemblGeneScaffold.html
  • lines changed 34, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/est.html
  • lines changed 77, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/genscan.html
  • lines changed 47, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • lines changed 2, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/intronEst.html
  • lines changed 78, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/mgcFullMrna.html
  • lines changed 43, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/mrna.html
  • lines changed 59, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/nestedRepeats.html
  • lines changed 79, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra
  • lines changed 8, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/pig/trackDb.chainNet.ra
  • lines changed 7, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra
  • lines changed 10, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/rat/rn5/gap.html
  • lines changed 23, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/rat/rn5/gold.html
  • lines changed 33, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
  • lines changed 9, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/refGene.html
  • lines changed 53, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/refGene.new.html
  • lines changed 62, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/rmsk.html
  • lines changed 83, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/tenrec/echTel1/gap.html
  • lines changed 16, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/tenrec/trackDb.chainNet.ra
  • lines changed 7, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 2, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
  • lines changed 51, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/turtle/chrPic1/gap.html
  • lines changed 21, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/turtle/chrPic1/gold.html
  • lines changed 24, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/turtle/chrPic1/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/turtle/chrPic1/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Made changes appropriate to adding chain/net tracks for the new assemblies: bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269)
• src/hg/makeDb/trackDb/windowmaskerSdust.html
  • lines changed 21, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).
• src/hg/makeDb/trackDb/xenoMrna.html
  • lines changed 66, context: html, text, full: html, text
    Fixed html formatting. Made various corrections. Part of QA of new assembly releases bosTau7 (redmine #6044), chrPic1 (redmine #6718), echTel1 (redmine #7671), galGal4 (redmine #251) and rn5 (redmine #7269).