File Changes for wong

v268_preview2 to v268_base (2012-05-29 to 2012-06-05) v268

• python/lib/ucscGb/qa/encode/tableCheck.py
  • lines changed 1, context: html, text, full: html, text
    chnged timeout to 60 seconds
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    adding in gff validation and acceptance
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release5.notes
  • lines changed 10, context: html, text, full: html, text
    updated notes
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 3, context: html, text, full: html, text
    updating description for ENSEMBL views. At the request of CSHL
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 536, context: html, text, full: html, text
    making patch for UwAffy Exon after moving out the file in an earlier commit from trackDb.wgEncode.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwAffyExonArray.patch.ra
  • lines changed 530, context: html, text, full: html, text
    making patch for UwAffy Exon after moving out the file in an earlier commit from trackDb.wgEncode.ra
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwAffyExonArray.ra
  • lines changed 532, context: html, text, full: html, text
    loading in patch for affy Rna Seq
  • lines changed 1, context: html, text, full: html, text
    making patch for UwAffy Exon after moving out the file in an earlier commit from trackDb.wgEncode.ra
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 2192, context: html, text, full: html, text
    adding in new ExonsDeNovo view
  • lines changed 163, context: html, text, full: html, text
    added in the last of the Nhek cells exon denovos
  • lines changed 82, context: html, text, full: html, text
    more stragglers to load exons denovo
  • lines changed 101, context: html, text, full: html, text
    removed useless items
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    revoked a contig view that was a dupe of another one, but the names changed earlier on, so there was no collision detected.
  • lines changed 423, context: html, text, full: html, text
    removed useless items
  • lines changed 643, context: html, text, full: html, text
    mass rename of all unrelease raw signals
  • lines changed 203, context: html, text, full: html, text
    renaming for corrections to expId1090 and 1740
  • lines changed 21, context: html, text, full: html, text
    correcting the replicates in the metadata number
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 49, context: html, text, full: html, text
    added in missing metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 369, context: html, text, full: html, text
    Changing from raw signals to signals
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 106, context: html, text, full: html, text
    updateing labExpIds for UwDgf
  • lines changed 10, context: html, text, full: html, text
    filled in hand labExpIds, and other metaData fixes
  • lines changed 2, context: html, text, full: html, text
    filling in the last hole
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 823, context: html, text, full: html, text
    filled in hand labExpIds, and other metaData fixes
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 874, context: html, text, full: html, text
    filling in missing labExpIds
  • lines changed 135, context: html, text, full: html, text
    filled in hand labExpIds, and other metaData fixes
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 544, context: html, text, full: html, text
    updating labExpIds for uwtfbs
  • lines changed 43, context: html, text, full: html, text
    filled in hand labExpIds, and other metaData fixes
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    starting a release5 FINAL for UwHistone
  • lines changed 1, context: html, text, full: html, text
    moving over to .patch.ra instead for uw histone
  • lines changed 2, context: html, text, full: html, text
    adding track to corrent tag errors, and also promote cell time from tier 2.5 to tier 2.
  • lines changed 2, context: html, text, full: html, text
    corrected mispelling
  • lines changed 3, context: html, text, full: html, text
    adding in patch stub for affy rna chip
  • lines changed 2, context: html, text, full: html, text
    loading in patch for affy Rna Seq
  • lines changed 1, context: html, text, full: html, text
    adding alpha for methyl rrbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.patch.ra
  • lines changed 249, context: html, text, full: html, text
    adding in patch stub for affy rna chip
  • lines changed 27, context: html, text, full: html, text
    loading in patch for affy Rna Seq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra
  • lines changed 28, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 1, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 0, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.ra
  • lines changed 5, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 5, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 5, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
  • lines changed 3, context: html, text, full: html, text
    fixing the html for vanessa
  • lines changed 29, context: html, text, full: html, text
    correcting html errors
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 387, context: html, text, full: html, text
    correct some defaults and removed origAssembly lines
  • lines changed 12, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 12, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 12, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.ra
  • lines changed 4, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
  • lines changed 32, context: html, text, full: html, text
    filling in missing labExpIds
  • lines changed 3, context: html, text, full: html, text
    fixing trackDb and html for mass rename
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
  • lines changed 7, context: html, text, full: html, text
    revoked a contig view that was a dupe of another one, but the names changed earlier on, so there was no collision detected.
  • lines changed 560, context: html, text, full: html, text
    fixing trackDb and html for mass rename
  • lines changed 24, context: html, text, full: html, text
    forgot to add trackDb
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.ra
  • lines changed 1, context: html, text, full: html, text
    correcting the indent for Duke Afft Exon release 3
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 1, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 0, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra
  • lines changed 2, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 2, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 2, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 1, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 2, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.ra
  • lines changed 181, context: html, text, full: html, text
    promoting the cell lines from 2.5 to 2 in these tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 2, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 2, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 1, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 1, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 1, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra
  • lines changed 5, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra
  • lines changed 5, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 5, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 5, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylSeq.ra
  • lines changed 31, context: html, text, full: html, text
    promoting the cell lines from 2.5 to 2 in these tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylWgbs.ra
  • lines changed 5, context: html, text, full: html, text
    promoting the cell lines from 2.5 to 2 in these tracks
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 0, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.patch.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 0, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra
  • lines changed 1, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.ra
  • lines changed 2, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.patch.ra
  • lines changed 1847, context: html, text, full: html, text
    adding track to corrent tag errors, and also promote cell time from tier 2.5 to tier 2.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.ra
  • lines changed 9, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
  • lines changed 2, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
  • lines changed 12, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.ra
  • lines changed 4229, context: html, text, full: html, text
    starting release 4, this commit already has the cell 2.5 -> 2 promotion done.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.ra
  • lines changed 1, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 1, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.ra
  • lines changed 0, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 0, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra
  • lines changed 4, context: html, text, full: html, text
    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.ra
  • lines changed 4, context: html, text, full: html, text
    correcting indents on the trackDb.ra files
  • lines changed 4, context: html, text, full: html, text
    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
  • lines changed 4, context: html, text, full: html, text
    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra
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    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.ra
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    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUmassDekker5C.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra
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    correcting indent on publc uncBsuProt
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release3.ra
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    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release4.ra
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    fixing indents in public tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.patch.ra
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    moving over to .patch.ra instead for uw histone
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    fixing matrix and defaults
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra
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    starting a release5 FINAL for UwHistone
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    moving over to .patch.ra instead for uw histone
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra
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    correcting indents on the trackDb.ra files
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    Revert "correcting indents on the trackDb.ra files"need to check why 50 lines disappeared.
    This reverts commit 3a48c28ef2cd3aa394f43881f9f4caa68ad8e96f.
    
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    indents for reals this time, the extra deleteions were due to white space collapsing from two newlines to one, and 6 lines of comments i manually eliminated to fix a trackDb problem
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.ra
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    fixing indents in public tracks