File Changes for angie

v267_base to v268_preview (2012-05-15 to 2012-05-22) v268

• src/hg/hgLogin/hgLogin.c
  • lines changed 3, context: html, text, full: html, text
    Use safecpy when there are no format args for safef, to avoid stricter gcc compile warnings on Ubuntu.
• src/hg/hgVarAnnogrator/hgVarAnnogrator.c
  • lines changed 7, context: html, text, full: html, text
    Added a warning note (research use only) before the Go button inthe variant annotation integrator (#6152), per Jim's suggestion.
    
  • lines changed 10, context: html, text, full: html, text
    Moving hgVarAnnogrator's warning note to after the "Go" button per Jim's request. (#6152)
• src/hg/js/hgVarAnnogrator.js
  • lines changed 91, context: html, text, full: html, text
    Fixed most jslint warnings - thanks Kate! (#6152)
• src/hg/lib/bbiChroms.as
  • lines changed 6, context: html, text, full: html, text
    Track #7964 (1000 Genomes Phase 1 Variant Calls) - grabbed VCF fromNCBI using Aspera (ascp) -- 142GB!
    
• src/hg/lib/bbiChroms.sql
  • lines changed 12, context: html, text, full: html, text
    Track #7964 (1000 Genomes Phase 1 Variant Calls) - grabbed VCF fromNCBI using Aspera (ascp) -- 142GB!
    
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    Prevent warning message about lack of special type support for views when type is gvf. (for #34)
• src/hg/makeDb/doc/hg18.txt
  • lines changed 79, context: html, text, full: html, text
    Track #34: Updating hg18 too.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 38, context: html, text, full: html, text
    Track #7964 (1000 Genomes Phase 1 Variant Calls) - grabbed VCF fromNCBI using Aspera (ascp) -- 142GB!
    
  • lines changed 31, context: html, text, full: html, text
    Track #34 (dbVar): data update from John Lopez at NCBI.
  • lines changed 47, context: html, text, full: html, text
    Track #34 (dbVar for human): added new dataset (nstd45, ISCA Curated).
• src/hg/utils/automation/gvfToBed8Attrs.pl
  • lines changed 39, context: html, text, full: html, text
    Track #34 (dbVar for human): added new dataset (nstd45, ISCA Curated).