ad81304fd947454ae9e5805a33064a9250f1bb6e luvina Tue May 15 10:06:56 2012 -0700 changed release date for hetGla1 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 1fc022e..b02f507 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -15,30 +15,58 @@ </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> + <FONT FACE="courier" SIZE="3"><B>15 May 2012 - Naked Mole-Rat + Assembly Now Available in Genome Browser </B></FONT> + <P>We are pleased to announce the release of a Genome Browser + for the July 2011 naked mole-rat, <em>Heterocephalus glaber</em> + (BGI version HetGla1.0, UCSC version hetGla1). This draft assembly, + produced by the + <A HREF="http://en.genomics.cn/" + TARGET=_blank>Beijing Genomics Institute</A>, has been sequenced using + Illumina reads with a sequencing depth of >20x. There are + 39,266 scaffolds with a total size of 2,643,961,837 bases. + The N50 size of the scaffolds is 1,321,980,918 bases with 502 + scaffolds larger, and 38,764 scaffolds smaller. The mitochondrial + sequence is also available as the virtual chromosome "chrM". + <P> + Bulk downloads of the sequence and annotation data are available + via the Genome Browser + <A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/hetGla1/">FTP server</A> or the + <A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#naked_mole-rat" + TARGET=_blank>Downloads</A> page. These data have + <A HREF="../goldenPath/credits.html#naked_mole-rat_use" + >specific conditions for use</A>. The naked mole-rat browser + annotation tracks were generated by UCSC and collaborators worldwide. + See the + <A HREF="../goldenPath/credits.html#naked_mole-rat_credits" + >Credits</A> page for a detailed list of the organizations and + individuals who contributed to the success of this release. + <HR> + <FONT FACE="courier" SIZE="3"><B>8 May 2012 - OpenHelix to Conduct Free Genome Browser Webinars in May</B></FONT> <P> <A HREF="http://www.openhelix.com" TARGET=_blank>OpenHelix</A> is conducting two free webinars on the UCSC Genome Browser: <UL> <LI><A HREF="http://www.openhelix.com/cgi/webinarInfo.cgi?id=43" TARGET=_blank>UCSC Genome Browser: An Introduction</A> (Thursday, May 17, 1pm EDT) -- designed for new users of the UCSC Genome Browser and those who want to improve their skills at basic navigation and display. <LI><A HREF="http://www.openhelix.com/cgi/webinarInfo.cgi?id=44" TARGET=_blank>UCSC Table Browser and Custom Tracks</A> (Thursday, May 24, at 1pm EDT) -- advanced Genome Browser topics, including creating Custom Tracks and using the Table @@ -50,77 +78,40 @@ Seating is limited and <A HREF="http://www.openhelix.com/cgi/webinar.cgi" TARGET=_blank>registration is required</A>. Slides may be downloaded from the <A HREF="http://www.openhelix.com/ucsc" TARGET=_blank>OpenHelix website</A> prior to the webinar. <P> OpenHelix provides training materials and programs on hundreds of free, publicly accessible bioinformatics and genomics resources. To browse their entire collection of UCSC genomics tutorials, go to the OpenHelix <A HREF="http://www.openhelix.com/ucsc" TARGET=_blank>UCSC training page</A>. <P> <HR> + + + <!-- start archives --> + <FONT FACE="courier" SIZE="3"><B>2 May 2012 - OpenHelix - Releases Updated Genome Browser Tutorials</B></FONT> - <P> + Releases Updated Genome Browser Tutorials: </B></FONT> <A HREF="http://www.openhelix.com" TARGET=_blank>OpenHelix</A> has released updated versions of two Genome Browser tutorial - suites: - <UL> - <LI><A HREF="http://www.openhelix.com/ucsc" - TARGET=_blank>UCSC Genome Browser: An Introduction</A> - <LI><A HREF="http://www.openhelix.com/cgi/tutorialInfo.cgi?id=28" - TARGET=_blank>UCSC Genome Browser: Custom Tracks and Table Browser</A> - </UL> - <P>The OpenHelix website also provides UCSC tutorials on the - Gene Sorter and VisiGene - (<A HREF="http://www.openhelix.com/cgi/tutorialInfo.cgi?id=76" - TARGET=_blank>UCSC Genome Browser: The Additional Tools</A>), - <A HREF="http://www.openhelix.com/cgi/tutorialInfo.cgi?id=116" - TARGET=_blank>ENCODE Foundations</A>, and the - <A HREF="http://www.openhelix.com/cgi/tutorialInfo.cgi?id=112" - TARGET=_blank>UCSC Archaeal Genome Browser</A>. - <P> - Each suite contains an online, narrated tutorial that highlights - and explains the features and functionality needed to use the - UCSC tools effectively, and a collection of training materials - that includes the PowerPoint slides used as a basis for the - tutorial, a suggested script for the slides, slide handouts, and - exercises. These materials, all of which are free, can be used - as a reference for users or as a ready-made presentation for - training others on the use of the Genome Browser. + suites. + <A HREF="goldenPath/newsarch.html#050212">Read more</A>. <P> - For more information on the tutorials and OpenHelix, see the - OpenHelix - <A HREF="http://www.digitaljournal.com/pr/691373#ixzz1tkDsoGSS" - TARGET=_blank>press release</A>. - <P> - <HR> - - <!-- start archives --> <FONT FACE="courier" SIZE="3"><B>18 April 2012 - GRC Planning Phase for GRCh38 Human Reference Assembly: </B></FONT> The <A HREF="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/" TARGET=_blank>Genome Reference Consortium</A> (GRC) plans to update the human reference assembly to GRCh38 in the summer of 2013. <A HREF="goldenPath/newsarch.html#041812">Read more</A>. <P> - <FONT FACE="courier" SIZE="3"><B>07 March 2012 - New Mouse - Browser Available: </B></FONT> - We have released the latest Genome Browser for the December 2011 - Mouse genome assembly produced by the - <a href="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/" - TARGET=_blank>Mouse Genome Reference Consortium</a> (GRCm38, - UCSC version mm10). - <A HREF="goldenPath/newsarch.html#030712">Read more</A>. - <P> - ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>