6ccc7be0e12f7d98db4f3b733d4c5cf7442d2b2d luvina Wed May 16 11:53:05 2012 -0700 made a correction to hetGla1 announcement diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 8c2025a..cd27a97 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,139 +1,139 @@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <font face="courier" size="3"><b> 15 May 2012 - New Fugu (fr3) Assembly Now Available in the Genome Browser </b></font> <p>We are pleased to announce the release of a Genome Browser for the October 2011 fugu, <i>Takifugu rubripes</i> (JGI v5.0, UCSC version fr3). Whole genome shotgun assembly was provided by the <a target="_blank" href="http://www.fugu-sg.org/">International Fugu Genome Sequencing Consortium,</a> led by JGI and the <a target="_blank" href="http://www.imcb.a-star.edu.sg/"> Singapore Institute of Molecular and Cell Biology</a> (IMCB).</p> <p>Bulk downloads of the sequence and annotation data are available via the Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/fr3/">FTP server</a> or the <a href="http://hgdownload.cse.ucsc.edu/downloads.html#fugu">Downloads</a> page. These data have <a href="../goldenPath/credits.html#fugu_credits">specific conditions for use</a>. The fugu (fr3) browser annotation tracks were generated by UCSC and collaborators worldwide. See the <a href="../goldenPath/credits.html#fugu_credits" >Credits</a> page for a detailed list of the organizations and individuals who contributed to the success of this release.</p> <hr> <FONT FACE="courier" SIZE="3"><B>15 May 2012 - Naked Mole-Rat Assembly Now Available in the Genome Browser </B></FONT> <P>We are pleased to announce the release of a Genome Browser for the July 2011 naked mole-rat, <i>Heterocephalus glaber</i> (BGI version HetGla1.0, UCSC version hetGla1). This draft assembly, produced by the <A HREF="http://en.genomics.cn/" TARGET=_blank>Beijing Genomics Institute</A>, has been sequenced using Illumina reads with a sequencing depth of >20x. There are 39,266 scaffolds with a total size of 2,643,961,837 bases. - The N50 size of the scaffolds is 1,321,980,918 bases with 502 + The N50 size of the scaffolds is 1,603,177 bases with 502 scaffolds larger, and 38,764 scaffolds smaller. The mitochondrial sequence is also available as the virtual chromosome "chrM". <P> Bulk downloads of the sequence and annotation data are available via the Genome Browser <A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/hetGla1/">FTP server</A> or the <A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#naked_mole-rat" TARGET=_blank>Downloads</A> page. These data have <A HREF="../goldenPath/credits.html#naked_mole-rat_use" >specific conditions for use</A>. The naked mole-rat browser annotation tracks were generated by UCSC and collaborators worldwide. See the <A HREF="../goldenPath/credits.html#naked_mole-rat_credits" >Credits</A> page for a detailed list of the organizations and individuals who contributed to the success of this release. <HR> <FONT FACE="courier" SIZE="3"><B>8 May 2012 - OpenHelix to Conduct Free Genome Browser Webinars in May</B></FONT> <P> <A HREF="http://www.openhelix.com" TARGET=_blank>OpenHelix</A> is conducting two free webinars on the UCSC Genome Browser: <UL> <LI><A HREF="http://www.openhelix.com/cgi/webinarInfo.cgi?id=43" TARGET=_blank>UCSC Genome Browser: An Introduction</A> (Thursday, May 17, 1pm EDT) -- designed for new users of the UCSC Genome Browser and those who want to improve their skills at basic navigation and display. <LI><A HREF="http://www.openhelix.com/cgi/webinarInfo.cgi?id=44" TARGET=_blank>UCSC Table Browser and Custom Tracks</A> (Thursday, May 24, at 1pm EDT) -- advanced Genome Browser topics, including creating Custom Tracks and using the Table Browser. </UL> <P> The webinars will last approximately 1hr 15min. <P> Seating is limited and <A HREF="http://www.openhelix.com/cgi/webinar.cgi" TARGET=_blank>registration is required</A>. Slides may be downloaded from the <A HREF="http://www.openhelix.com/ucsc" TARGET=_blank>OpenHelix website</A> prior to the webinar. <P> OpenHelix provides training materials and programs on hundreds of free, publicly accessible bioinformatics and genomics resources. To browse their entire collection of UCSC genomics tutorials, go to the OpenHelix <A HREF="http://www.openhelix.com/ucsc" TARGET=_blank>UCSC training page</A>. <P> <HR> <!-- start archives --> <FONT FACE="courier" SIZE="3"><B>2 May 2012 - OpenHelix Releases Updated Genome Browser Tutorials: </B></FONT> <A HREF="http://www.openhelix.com" TARGET=_blank>OpenHelix</A> has released updated versions of two Genome Browser tutorial suites. <A HREF="goldenPath/newsarch.html#050212">Read more</A>. <P> <FONT FACE="courier" SIZE="3"><B>18 April 2012 - GRC Planning Phase for GRCh38 Human Reference Assembly: </B></FONT> The <A HREF="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/" TARGET=_blank>Genome Reference Consortium</A> (GRC) plans to update the human reference assembly to GRCh38 in the summer of 2013. <A HREF="goldenPath/newsarch.html#041812">Read more</A>. <P> ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>