File Changes for steve
switch to commits view, user indexv267_base to v268_preview (2012-05-15 to 2012-05-22) v268
- src/hg/htdocs/admin/jk-install.html
- lines changed 121, context: html, text, full: html, text
In mirror.html, replaced link to jk-install with link to source tree. Edited jk-install to point to source tree. (redmine #2511)
- src/hg/htdocs/admin/mirror.html
- lines changed 12, context: html, text, full: html, text
Added a note about new versions of MySQL disabling LOAD DATA LOCAL INFILE (redmine 7423)
- lines changed 2, context: html, text, full: html, text
In mirror.html, replaced link to jk-install with link to source tree. Edited jk-install to point to source tree. (redmine #2511)
- lines changed 1, context: html, text, full: html, text
Made change in wording suggested by Larry (redmine #7423)
- src/hg/htdocs/goldenPath/help/bedgraph.html
- lines changed 10, context: html, text, full: html, text
Changed the coordinates in the example since they fell outside the range of chromosome 19 on hg19
- src/hg/htdocs/goldenPath/help/wiggle.html
- lines changed 18, context: html, text, full: html, text
Added a line specifying that fixedStep tracks must keep the same step size. Also fixed the example because it falls outside the range of hg19 chromosome 19. (redmine #7707)
- lines changed 29, context: html, text, full: html, text
Added new track options and descriptions (redmine #6866)
- src/hg/makeDb/trackDb/grcIncidentDb.html
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Moved some periods outside the hyperlinks
- src/hg/makeDb/trackDb/human/hg18/burgeRnaSeqGemMapperAlign.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/ceuBcellRNASeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/fantomCageGraphTop.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeqRelease2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeqRelease3original.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMapRelease2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExonArray.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeqProv.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeqRelease1.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSunyalbanyRnaGeneChip.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwAffyExonArray.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.new.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseqRelease2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleRNAseq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/burgeRnaSeqGemMapperAlign.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/ctgPos.html
- src/hg/makeDb/trackDb/human/hg19/gap.html
- src/hg/makeDb/trackDb/human/hg19/gold.html
- src/hg/makeDb/trackDb/human/hg19/knownGene.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSc.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeExonArraySuper.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencode.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibShRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.html
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- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html
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- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html
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- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.html
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- src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release4.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release5.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release4.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release2.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19Patch2/gap.html
- src/hg/makeDb/trackDb/human/hg19Patch2/gold.html
- src/hg/makeDb/trackDb/human/hgIkmc.html
- src/hg/makeDb/trackDb/human/ntModernHumans.html
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- src/hg/makeDb/trackDb/human/ntSssSnps.html
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- src/hg/makeDb/trackDb/human/ntSssTop5p.html
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- src/hg/makeDb/trackDb/human/ntSssZScorePMVar.html
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- src/hg/makeDb/trackDb/mouse/komp.html
- src/hg/makeDb/trackDb/ntSeqContigs.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/ntSeqReads.html
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Removed extra '../..' which was causing error messages in broken link reports
- src/product/README.mysql.setup
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Added a note about new versions of MySQL disabling LOAD DATA LOCAL INFILE (redmine 7423)
- lines changed 1, context: html, text, full: html, text
Made change in wording suggested by Larry (redmine #7423)
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