ac4d6f70276e40ffd9355438dc7f439a7d469aa9
braney
  Tue Jun 19 15:40:11 2012 -0700
adding twoBitDup, a utility to list the sequences in a twoBit that appear more than once (by value, not name).
diff --git src/makefile src/makefile
index 74a5f99..f145ea5 100644
--- src/makefile
+++ src/makefile
@@ -50,31 +50,31 @@
 	cd utils/faToTwoBit && ${MAKE}
 	cd utils/twoBitToFa && ${MAKE}
 	cd utils/twoBitInfo && ${MAKE}
 	cd isPcr && ${MAKE}
 	cd blatz && ${MAKE}
 
 # all of these application makefiles have been updated to include use
 #	of DESTDIR and BINDIR
 
 UTILS_APPLIST = bedClip bedGraphToBigWig bedToBigBed \
         bigBedInfo bigBedSummary bigBedToBed bigWigAverageOverBed  \
 	bigWigInfo bigWigSummary bigWigToBedGraph bigWigToWig\
 	faCount faFrag faOneRecord faPolyASizes faRandomize faSize \
 	faSomeRecords faToNib \
 	faToTwoBit htmlCheck nibFrag paraFetch paraSync sizeof stringify \
-	textHistogram twoBitInfo twoBitToFa userApps wigCorrelate wigToBigWig
+	textHistogram twoBitDup twoBitInfo twoBitToFa userApps wigCorrelate wigToBigWig
 
 HG_APPLIST = bedSort liftUp liftOver bedItemOverlapCount encode/validateFiles \
 	 ratStuff/mafsInRegion ratStuff/mafSpeciesSubset \
 	 pslCDnaFilter genePredToGtf pslPretty pslReps pslSort 
 
 
 HG_UTILS_APPLIST = bedExtendRanges gff3ToGenePred gtfToGenePred \
 	hubCheck overlapSelect makeTableList
 
 HG_HGWIGGLE_APP = hgWiggle
 
 BLAT_APPLIST = blat gfClient gfServer 
 
 userApps: topLibs hgLib
 	@for P in ${UTILS_APPLIST}; do \