121c4f382ac9adc1994e7ff98c84c493a394964a
galt
  Mon Jun 25 16:21:03 2012 -0700
fixing problem truncating bed lists after first element by restoring the comma
diff --git src/utils/bedToBigBed/makefile src/utils/bedToBigBed/makefile
index 36f9d77..1c391ca 100644
--- src/utils/bedToBigBed/makefile
+++ src/utils/bedToBigBed/makefile
@@ -10,19 +10,19 @@
 bedToBigBed: $O ${MYLIBS}
 	@${MKDIR} "${DESTDIR}${BINDIR}"
 	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} ${L}
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
 compile:: ${O} ${MYLIBS}
 	${CC} ${COPT} ${CFLAGS} -o ${A}${EXE} $O ${MYLIBS} ${L}
 
 clean::
 	rm -f ${O} ${A}
 	rm -fr tests/output
 
 test:
 	@rm -fr tests/output
 	@${MKDIR} tests/output
-	${A} -as=itemRgb.as itemRgb.bed chrom.sizes tests/output/itemRgb.bb 2> /dev/null
+	${A} -type=bed9 -as=itemRgb.as itemRgb.bed chrom.sizes tests/output/itemRgb.bb 2> /dev/null
 	bigBedToBed tests/output/itemRgb.bb test_itemRgb.bed
 	diff itemRgb.bed test_itemRgb.bed
 	rm -fr tests/output test_itemRgb.bed