Commits for hiram

v269_preview to v269_preview2 (2012-06-12 to 2012-06-19) v269

• done with genbank business
  • src/hg/makeDb/doc/ochPri2.txt - lines changed 90, context: html, text, full: html, text
• Added tupBel1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• done with genbank business
  • src/hg/makeDb/doc/tupBel1.txt - lines changed 165, context: html, text, full: html, text
• cleaned up for release
  • src/hg/makeDb/trackDb/dog/canFam3/gap.html - lines changed 45, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam3/gold.html - lines changed 7, context: html, text, full: html, text
• Added sorAra1.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• finished with genbank business
  • src/hg/makeDb/doc/sorAra1.txt - lines changed 89, context: html, text, full: html, text
• add gap annotation and phyloFit tree model estimate for 60-way
  • src/hg/makeDb/doc/mm10.txt - lines changed 225, context: html, text, full: html, text
• Added turTru2.
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• genbank business done
  • src/hg/makeDb/doc/turTru2.txt - lines changed 91, context: html, text, full: html, text
• public domain drawing from Robbie Cada
  • src/hg/htdocs/images/Latimeria_chalumnae.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• allow png or jpg images for species picture on gateway page
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 8, context: html, text, full: html, text
• minimalist page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/latCha/latCha1/description.html - lines changed 116, context: html, text, full: html, text
• it is a png, not a jpg
  • src/hg/makeDb/trackDb/latCha/latCha1/description.html - lines changed 1, context: html, text, full: html, text
• addig featureBits to the userApps delivery
  • src/hg/featureBits/makefile - lines changed 2, context: html, text, full: html, text
  • src/makefile - lines changed 1, context: html, text, full: html, text
• indicate photo pickup procedure
  • src/hg/makeDb/doc/latCha1.txt - lines changed 20, context: html, text, full: html, text
• beginning the phastCons/phyloP runs
  • src/hg/makeDb/doc/mm10.txt - lines changed 1036, context: html, text, full: html, text
• copy from 2012-06-12
  • src/hg/utils/automation/configFiles/latCha1.config.ra - lines changed 22, context: html, text, full: html, text
• public commons from Robbie Cada
  • src/hg/htdocs/images/Oreochromis_niloticus.gif - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• minimalist page from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/oreNil/oreNil2/description.html - lines changed 119, context: html, text, full: html, text
• copy from 2012-06-14
  • src/hg/utils/automation/configFiles/oreNil2.config.ra - lines changed 22, context: html, text, full: html, text
• allow png,jpg,gif species photographs
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 12, context: html, text, full: html, text
• now using the db.config.ra file to place assembly information into the README files
  • src/hg/utils/automation/makeDownloads.pl - lines changed 139, context: html, text, full: html, text
• break up the genomewiki URL to avoid detection via google robots
  • src/hg/lib/web.c - lines changed 2, context: html, text, full: html, text