File Changes for cricket

v270_preview2 to v270_base (2012-07-10 to 2012-07-17) v270

• src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf
  • lines changed 2, context: html, text, full: html, text
    Increaseing to 10 mismatches
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUchicagoTfbs.release2.notes
  • lines changed 420, context: html, text, full: html, text
    Adding a notes files for UChicago
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwAffyExonArray.release3.notes
  • lines changed 429, context: html, text, full: html, text
    Preparing for pushQ, adding expIds, notes file, fixing names in the downloads files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra
  • lines changed 221, context: html, text, full: html, text
    adding accessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra
  • lines changed 6, context: html, text, full: html, text
    Fixing the expIds
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 321, context: html, text, full: html, text
    Adding new data in, changing the matrix around a little bit
  • lines changed 53, context: html, text, full: html, text
    Preparing for pushQ, adding expIds, notes file, fixing names in the downloads files
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Adding release 2 of FSU RepliChip
  • lines changed 2, context: html, text, full: html, text
    Removing patch file, not sure what the goal was with this pathch
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra
  • lines changed 473, context: html, text, full: html, text
    Changing the cell tags to promot tiers and to fix numeric tags
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra
  • lines changed 10, context: html, text, full: html, text
    Tag changes only, no visible changes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
  • lines changed 1, context: html, text, full: html, text
    removing from the super track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.release2.html
  • lines changed 150, context: html, text, full: html, text
    Adding release 2 of FSU RepliChip
• src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.release2.ra
  • lines changed 105, context: html, text, full: html, text
    Adding release 2 of FSU RepliChip
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra
  • lines changed 31, context: html, text, full: html, text
    Promoting Tier 2 and cell line tag changes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.ra
  • lines changed 8, context: html, text, full: html, text
    Fixing the numeric tags and adding Tier 1 label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra
  • lines changed 17, context: html, text, full: html, text
    Changing cell labels and view labels, should be no visible change
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.patch.ra
  • lines changed 870, context: html, text, full: html, text
    Removing patch file, not sure what the goal was with this pathch
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 25, context: html, text, full: html, text
    Tag change, no visible change
  • lines changed 3, context: html, text, full: html, text
    Adding the hyphens for H1-hesc
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra
  • lines changed 9, context: html, text, full: html, text
    Fixing the numeric tags and adding Tier 1 label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.ra
  • lines changed 39, context: html, text, full: html, text
    Fixing the numeric tags and adding Tier 1 label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.html
  • lines changed 5, context: html, text, full: html, text
    Added release notes
  • lines changed 4, context: html, text, full: html, text
    Changing the long and short labels, the defaults and adding the release notes
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.ra
  • lines changed 141, context: html, text, full: html, text
    Answering ticket #5697Specifially, the long and short labels and
    
    1. In the track controls, Peaks are set to dense, but they should be set to pack.
    
    2. There is a cell line listed as "NCOR1", but the Input for it lists "COR1" in the matrix and in the Factor column below the matrix.
    
    3. In hgTrackUi, when sorting by the Replicated column, "Pooled" shows up before 1 and 2. It seems like "Pooled" should show up after 1 and 2.
    
  • lines changed 147, context: html, text, full: html, text
    Changing the long and short labels, the defaults and adding the release notes
  • lines changed 1, context: html, text, full: html, text
    Changing defaut views
  • lines changed 13, context: html, text, full: html, text
    Changed the way Inputs appeared in the matrix
  • lines changed 54, context: html, text, full: html, text
    Changed the short labels to add Sg and Pk
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release3.html
  • lines changed 98, context: html, text, full: html, text
    Trying to work on the html changes for Brian in ticket #6777
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release3.ra
  • lines changed 267, context: html, text, full: html, text
    Adding new data in, changing the matrix around a little bit
  • lines changed 1, context: html, text, full: html, text
    Trying to work on the html changes for Brian in ticket #6777