67177a6e5612ac45b606ff2ae34920191bed7516
tdreszer
  Wed Jul 11 15:43:00 2012 -0700
Next batch of many checkins as dictated by Jim.  Formatting if and limiting lines to 100 chars.  Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history.  None of these changes should affect executables in any way.
diff --git src/hg/hgc/mafClick.c src/hg/hgc/mafClick.c
index df38dfe..822a5e6 100644
--- src/hg/hgc/mafClick.c
+++ src/hg/hgc/mafClick.c
@@ -316,32 +316,33 @@
 		    strand = (strand == '+') ? '-' : '+';
 #endif
 		if (strand == '-') revComp = "&hgSeq.revComp=on";
 
 		linkToOtherBrowser(dbOnly, chrom, s, e);
 		fprintf(f,"B");
 		fprintf(f, "</A>");
 		fprintf(f, " ");
 
 		}
 	    else
 		fprintf(f, "  ");
 
             if (hDbExists(dbOnly))
                 {
-                printf("<A TARGET=\"_blank\" HREF=\"%s?o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d&db=%s%s\">D</A> ",  hgcName(),
-                    s, cgiEncode(chrom), chrom,  s, e, dbOnly,revComp);
+                printf("<A TARGET=\"_blank\" HREF=\"%s?o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d"
+                       "&db=%s%s\">D</A> ",  hgcName(), s, cgiEncode(chrom), chrom,  s,
+                       e, dbOnly,revComp);
                 }
 	    else
 		fprintf(f, "  ");
             fprintf(f, "%*s %dbp\n", srcChars, org,mc->rightLen);
 	    }
 	}
     fprintf(f, "\n");
     }
 freeMem(summaryLine);
 
 }
 
 static void mafLowerCase(struct mafAli *maf)
 /* Lower case letters in maf. */
 {
@@ -638,33 +639,31 @@
     if (subList != NULL)
 	{
 	char *showVarName = "hgc.showMultiBase";
 	char *showVarVal = cartUsualString(cart, showVarName, "all");
 	boolean onlyDiff = sameWord(showVarVal, "diff");
 #ifdef ADDEXONCAPITAL
 	char *codeVarName = "hgc.multiCapCoding";
 	char *codeVarVal = cartUsualString(cart, codeVarName, "coding");
 	boolean onlyCds = sameWord(codeVarVal, "coding");
 #endif
         /* add links for conservation score statistics */
         consWiggles = wigMafWiggles(database, tdb);
         int wigCount = slCount(consWiggles);
         if (wigCount == 1)
             {
-            conservationStatsLink(tdb,
-                        "Conservation score statistics",
-                                consWiggles->table);
+            conservationStatsLink(tdb, "Conservation score statistics", consWiggles->table);
             }
         else if (wigCount > 1)
             {
             /* multiple wiggles. List all that have been turned on with
              * checkboxes */
 
             /* Scan for cart variables -- do any exist, are any turned on ? */
             boolean wigSet = FALSE;
             boolean wigOn = FALSE;
             for (consWig = consWiggles; consWig != NULL;
                         consWig = consWig->next)
                 {
                 char *wigVarSuffix = NULL;
                 (void)wigMafWiggleVar(tdb->track, consWig, &wigVarSuffix);
                 if (cartVarExistsAnyLevel(cart, tdb, FALSE, wigVarSuffix))