Commits for wong

v269_base to v270_preview (2012-06-26 to 2012-07-03) v270

• adding it in again
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 855, context: html, text, full: html, text
• moving objStatus for mm9 Licr labs over to beta
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeLicrHistone.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeLicrTfbs.ra - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodeLicrTfbs.ra - lines changed 3, context: html, text, full: html, text
• cleaning output by cleaning conditionals
  • src/hg/encode/cellTypeParser/cellTypeParser.py - lines changed 2, context: html, text, full: html, text
• added last cshl short tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 359, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra - lines changed 96, context: html, text, full: html, text
• adding in new open chrom dnase tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 560, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 104, context: html, text, full: html, text
• adding in new cshl short tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 1476, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra - lines changed 49, context: html, text, full: html, text
• added in md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 178, context: html, text, full: html, text
• fixing old conflict, new md5sums, and added accessions and expId
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 136, context: html, text, full: html, text
• updating notes file
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlShortRnaSeq.release3.notes - lines changed 279, context: html, text, full: html, text
• fixed short and long labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra - lines changed 135, context: html, text, full: html, text
• qa fixes to html
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html - lines changed 1, context: html, text, full: html, text
• removing alignments from view, and correcting defaults
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 173, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra - lines changed 1594, context: html, text, full: html, text
• fixed overlapping attic and objStatus replaced
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 5, context: html, text, full: html, text
• updating notes file for cshl short
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlShortRnaSeq.release3.notes - lines changed 692, context: html, text, full: html, text
• qa html fixes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html - lines changed 15, context: html, text, full: html, text
• changed cell tier tags and correct treatment labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra - lines changed 722, context: html, text, full: html, text
• added in new sydh tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 2397, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra - lines changed 320, context: html, text, full: html, text